BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3853.p
         (211 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096262|ref|YP_001101337.1| ABC transporter periplasmic sub...   238   1e-64

>gi|134096262|ref|YP_001101337.1| ABC transporter periplasmic
           substrate-binding protein [Herminiimonas arsenicoxydans]
          Length = 185

 Score =  238 bits (607), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 106/171 (61%), Positives = 141/171 (82%)

Query: 14  AVCGVAHAEKADSTKPTNIEADQMVYDDVRQVKTFTGNVVMTRGTLIIKAGRVVLTTDQY 73
            V   AHAEKAD++KPTN+EADQM YDDV+Q+ TF GNVV+TRG++++KA ++V+T D  
Sbjct: 15  CVMPAAHAEKADASKPTNVEADQMQYDDVKQINTFIGNVVLTRGSILMKANKMVVTQDPA 74

Query: 74  GYENAVLYAAPGALATFRQKRDGGPNLWIEGQAERIEYSEQTEVSKLFQRAHIQRMDGDR 133
           GY+  V+YAAPG LA+FRQKRDGGP+ WI+GQAERIEY ++ E+ KLF +A ++R++  +
Sbjct: 75  GYQFVVMYAAPGTLASFRQKRDGGPDQWIDGQAERIEYDDKNEIMKLFSKARMRRLENGK 134

Query: 134 ITDEVNGEFISYDSRAEFYSVNNTASGESKPGAGRITAVIQPKNPPPAPAP 184
            TDEVNGE+ISYD+RAEF++V+NTASG+SKPGAGRI A+IQP+      AP
Sbjct: 135 TTDEVNGEYISYDTRAEFFTVHNTASGDSKPGAGRIKAIIQPRATDTKKAP 185


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.129    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 351,584
Number of extensions: 12640
Number of successful extensions: 18
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 211
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 133
Effective length of database: 743,337
Effective search space: 98863821
Effective search space used: 98863821
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)