BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3851.p
         (184 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096260|ref|YP_001101335.1| 3-deoxy-D-manno-octulosonate 8-...   255   8e-70

>gi|134096260|ref|YP_001101335.1| 3-deoxy-D-manno-octulosonate
           8-phosphate phosphatase [Herminiimonas arsenicoxydans]
          Length = 179

 Score =  255 bits (652), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 122/183 (66%), Positives = 144/183 (78%), Gaps = 5/183 (2%)

Query: 1   MTTPTFASTLPALALAKAATIRLMIFDVDGVLTDGGLFYGEEGEAFKRFNALDGHGIKLM 60
           MT+PT  +     A+A+A+ +RLMIFDVDG+LTDG L +G +GE  K FN LDGHGIKL+
Sbjct: 1   MTSPTDNA-----AIARASNVRLMIFDVDGILTDGSLHFGADGEVIKTFNVLDGHGIKLL 55

Query: 61  QQYGTAAAIITARQSPYVLRRARDLGIAHVFQGVHDKRQAFEQLLQQLQLAPAACGYLGD 120
           QQ G A AII+ARQSP VLRRA DLGI HVFQG+HDKR AFEQLL Q  +A  ACG++GD
Sbjct: 56  QQSGVATAIISARQSPIVLRRATDLGIHHVFQGIHDKRTAFEQLLTQTGVAATACGFIGD 115

Query: 121 DIIDLPVLTRVGFKACVANGHREVKSRCDYVTQASGGHGAVREICDLVLAAQGNYEAALA 180
           D+IDLP+L+RVGF A V N H EV++R  YVTQA GG GA RE+CD +L AQGNYEAALA
Sbjct: 116 DVIDLPILSRVGFAASVPNAHPEVRTRVHYVTQAGGGRGAARELCDFILRAQGNYEAALA 175

Query: 181 PYL 183
           PYL
Sbjct: 176 PYL 178


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.324    0.139    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 322,685
Number of extensions: 11621
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 1,000,347
Length adjustment: 76
Effective length of query: 108
Effective length of database: 749,927
Effective search space: 80992116
Effective search space used: 80992116
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 126 (53.1 bits)