BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3850.p
         (342 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096259|ref|YP_001101334.1| D-arabinose 5-phosphate isomera...   489   e-139

>gi|134096259|ref|YP_001101334.1| D-arabinose 5-phosphate isomerase
           [Herminiimonas arsenicoxydans]
          Length = 342

 Score =  489 bits (1258), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 250/342 (73%), Positives = 282/342 (82%)

Query: 1   MSVTDDKTTPASFSAGAARRAIELARQTLQIEADAILALKNRLRDDHAEPLALAVQALLQ 60
           MSV   K  PA+F A +A RA++ AR TLQIEADAILALK R+ ++  E    AV  LL 
Sbjct: 1   MSVPHAKKPPATFDAKSATRALQFARDTLQIEADAILALKQRISNESGEQFIQAVALLLN 60

Query: 61  CQGRAVVSGIGKSGHIGRKIAATLASTGTPALFMHPAEAAHGDLGMVTPKDVFIAISNSG 120
           C GR VVSGIGKSGHI RKIA+TLASTGTPALF+H AEA+HGDLGM+T  D  IAIS SG
Sbjct: 61  CTGRVVVSGIGKSGHIARKIASTLASTGTPALFVHAAEASHGDLGMITADDALIAISYSG 120

Query: 121 ETAELLAIVPIIKRMGAVIIAMTGNDDSSLAGMAAVHLNVGVAQEACTLNLAPTASTTAT 180
           E  EL+AIVPIIKRMGA +I +TGNDDS+LA +A VHLNV V +EAC LNLAPTASTTAT
Sbjct: 121 EAGELVAIVPIIKRMGATLITITGNDDSTLAQLADVHLNVRVDKEACPLNLAPTASTTAT 180

Query: 181 LAMGDALAVSLLDARGFMEEDFARSHPGGALGRRLLTHVRDVMRSGEAIPAVRPDVSLSA 240
           LA+GDALAV+LLDARGF EEDFARSHPGGALGRRLLTHVRDVMR+G+AIP V  D SL  
Sbjct: 181 LAIGDALAVALLDARGFGEEDFARSHPGGALGRRLLTHVRDVMRTGDAIPTVGKDASLYT 240

Query: 241 ALMEITRKGMAMTAVVDEQFRPLGVFTDGDLRRLLERGQDFSGFSIAEVMHAHPQTVNQD 300
           AL+EI+RKGMAMTAVVD   R +GVFTDGDLRRL+E  +DFS  SIAEVMHA+P++V  D
Sbjct: 241 ALLEISRKGMAMTAVVDAGGRAIGVFTDGDLRRLIENQRDFSTLSIAEVMHANPRSVQPD 300

Query: 301 QLAVDAVALMEQFRINQLLVTDAAGVLTGALHIHDLTRAKVI 342
           QLAVDAV +ME+FRINQLLVT+A G L GALHIHDLTRAKVI
Sbjct: 301 QLAVDAVKMMEEFRINQLLVTNADGKLVGALHIHDLTRAKVI 342


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 588,739
Number of extensions: 22734
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 260
Effective length of database: 730,157
Effective search space: 189840820
Effective search space used: 189840820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)