BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3848.p (541 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 474 e-135 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 408 e-115 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 405 e-114 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 387 e-109 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 382 e-107 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 474 bits (1221), Expect = e-135, Method: Compositional matrix adjust. Identities = 286/551 (51%), Positives = 379/551 (68%), Gaps = 15/551 (2%) Query: 1 MFSKLSIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDRLVALSQLERMSAA 60 M ++I+S L+FV+ L+LLL+A+G+LG+ SL +TN + S+YEDR V + QL + Sbjct: 1 MLKNITIKSLLLFVMGILSLLLIATGILGLTSLDTTNKALRSVYEDRTVPIGQLNTVITL 60 Query: 61 LDAARNGISTSIVGDSGDIDANMDKIEKALKANDAVVMKYQQTPLSSEERALLEKMIAQR 120 + ++ SI GD G + MD IEK K + + + L+ E + L +K A R Sbjct: 61 STINQLDLAASIYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKVLADKFAADR 120 Query: 121 QKFVVEGIKPATEALRNRDFQGAIELYGGVMLKLYAEAHATLAQLMDLQRSVGREMHEQA 180 + F+ + ++PA A R + E+ G M +L A +A L+DL+ ++ E++ Sbjct: 121 KIFLEKALQPAIAASRGGNVLRVTEIVNGPMEELITPVRAGVAALIDLELREAKKAFEES 180 Query: 181 QQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLTQRIEVHS 240 Q R+ + I A++ G+++A M L+R I+RPL AV++A+ VAAGDLTQ+I V+S Sbjct: 181 QTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNS 240 Query: 241 QDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAGALEET 300 +ETGQL+QAL+ MND+L V VR T+TI AS EIA GN DLSSRTE QAG+LEET Sbjct: 241 TNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEET 300 Query: 301 ASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSSNKIVDII 360 AS+ME+LTSTVR NA+NA+QA QL SA+EVAV+GG VV +VV TM SI SS KIVDII Sbjct: 301 ASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDII 360 Query: 361 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIDDSV 420 VID IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LIDDSV Sbjct: 361 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSV 420 Query: 421 TRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAITQMDESTQ 480 +V +GS LV QAG+T+ E+V SV+ V+ +++EI++A QEQS GIE+VN+AI+QMDE TQ Sbjct: 421 HKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQ 480 Query: 481 QNAALVEQAAAAAQAMQEQAARLSAAVSVFRLN---------------GPALPGPAAGVS 525 QNAALVEQAAAAAQ+MQ+QA LS AV++F+L+ PAL + Sbjct: 481 QNAALVEQAAAAAQSMQDQAVELSGAVAIFKLDAGGSAMSTSASTRRAAPALQAANPATT 540 Query: 526 AQAAMALPGKE 536 ++A A P K+ Sbjct: 541 SRALTAAPHKQ 551 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 408 bits (1048), Expect = e-115, Method: Compositional matrix adjust. Identities = 259/548 (47%), Positives = 360/548 (65%), Gaps = 16/548 (2%) Query: 1 MFSKLSIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDRLVALSQLERMSAA 60 M +SI+ RL+ + F+ ++L+ G +G++ +++TN + ++Y +++ + + M Sbjct: 1 MLKNISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTR 60 Query: 61 LDAARNGIS-TSIVGDSGDIDANMDKIEKALKANDAVVMKYQQTPLSS-EERALLEKMIA 118 L AR G++ ++ + + + E ++ KY P+ + EER + +++ A Sbjct: 61 LLQARAGLNLVAMRPHEEGSERILKRAENFYLQSEEEWKKYLSLPIETLEERKVADEVTA 120 Query: 119 QRQKFVVE---GIKPATEALRNRDFQGAIELYGGVMLKLYAEAHATLAQLMDLQRSVGRE 175 +R +++ E G+ A A RN + + ++ M L+ + +L++LQ Sbjct: 121 KRIRYLKEAEQGLIAALRAGRNEEVE---DILVNKMPPLFQSLTKSTDELVELQMKSAAT 177 Query: 176 MHEQAQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQGVAAGDLTQR 235 ++ +Q + +I V +L GL+ + L+RAI+ PL+ + +A+GDLT Sbjct: 178 GYQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSN 237 Query: 236 IEVHSQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAG 295 IEV S++E G LM LQ+M L V QVR + I+TA++EIA GNLDLSSRTEQQA Sbjct: 238 IEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAA 297 Query: 296 ALEETASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSSNK 355 +LEETAS+ME+LTSTV+ N +NA+QA QLA SAS VAV+GG VV VV+TM +IN S+ K Sbjct: 298 SLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARK 357 Query: 356 IVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVL 415 IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK L Sbjct: 358 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHL 417 Query: 416 IDDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAITQM 475 IDDSV +V +G+ LVA+AG T+ EVV SV++V+ +++EI AA QEQS GIE+VN AI QM Sbjct: 418 IDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQM 477 Query: 476 DESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRLNG----PA--LP--GPAAGVSAQ 527 DE TQQNAALVEQAAAAA ++++QA LS VSVF+L G P +P P A S Sbjct: 478 DEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKLQGHQSAPQNLVPQARPKALESRP 537 Query: 528 AAMALPGK 535 AA+A GK Sbjct: 538 AAIAHTGK 545 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 405 bits (1041), Expect = e-114, Method: Compositional matrix adjust. Identities = 270/531 (50%), Positives = 356/531 (67%), Gaps = 34/531 (6%) Query: 2 FSKLSIRSRLIFVIAFLALLLVASGVLGVISLRSTNAQMGSLYEDRLVALSQLERMSAAL 61 F L I RL L +L+ V+GV+ L+ A+ L E+ + ER++ Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDV-AKATVLMEEATIK----ERLAQQW 57 Query: 62 DAARNGISTSIVGDSGDI---DANMDKI-EKALKANDAVVMKYQQT----PLSSEERALL 113 GI T+ V + D DKI ++ + A A V K Q +S+E + LL Sbjct: 58 ---IKGIETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLL 114 Query: 114 EKMIAQRQKFVVEGIKPATEALRNRDFQGAIELYGGVMLKLYAEAHATL--------AQL 165 + +R + I+ + + R+ +GA EL + K+ A A + AQ+ Sbjct: 115 ATVAEKRATYT--AIRD--DVMNLREARGA-ELQNAIANKMKPAADAYIQSVEAVVNAQI 169 Query: 166 MDLQRSVGREMHEQAQQRYQTLLVIMGVAMLAGLVVALLMGGLLVRAISRPLQRAVKVAQ 225 + + + GR + Q + LL+++G L L + +++ +L R+I++PL AV VA+ Sbjct: 170 NNFEDAKGR--VDTIYQSARMLLIVLG---LVALTLGIVLAWMLTRSITKPLDYAVSVAR 224 Query: 226 GVAAGDLTQRIEVHSQDETGQLMQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLD 285 VA+GDLT RI V S+DETGQL+QAL+ MND+L + QVR DTIATAS++IA GNLD Sbjct: 225 LVASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLD 284 Query: 286 LSSRTEQQAGALEETASAMEQLTSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDT 345 LSSRTE+QA +LEETAS+ME+LTSTV+ NA+NA+QA QLA +AS VA +GG VV +VVDT Sbjct: 285 LSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDT 344 Query: 346 MSSINQSSNKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 405 M IN S+ KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS Sbjct: 345 MDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS 404 Query: 406 AAAAKEIKVLIDDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGI 465 AAAAKEIK LIDDSV +V +GS LVA+AG T+ EVV SV++V+ ++ EI AA QEQS GI Sbjct: 405 AAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGI 464 Query: 466 EEVNRAITQMDESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVFRLNGPA 516 E+VN+AI QMD+ TQQNAALVE+AAAAA+++ EQAA L+ AVS+F+L+G A Sbjct: 465 EQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVA 515 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 387 bits (994), Expect = e-109, Method: Compositional matrix adjust. Identities = 218/311 (70%), Positives = 262/311 (84%) Query: 211 RAISRPLQRAVKVAQGVAAGDLTQRIEVHSQDETGQLMQALQQMNDNLQGIVGQVRLSTD 270 R+I+RPL+ AV+VA+ VA GDL RIEV+S DETGQL+QAL+ MND L V +VR + Sbjct: 214 RSITRPLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIE 273 Query: 271 TIATASSEIAHGNLDLSSRTEQQAGALEETASAMEQLTSTVRANAENAQQAKQLAHSASE 330 TIATAS++IA GNLDLSSRTE+QA +LEETAS+ME+LTSTV+ NA+NA+QA QLA SAS Sbjct: 274 TIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASG 333 Query: 331 VAVRGGQVVRQVVDTMSSINQSSNKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRG 390 VA +GG VV QVVDTM IN S+ KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 334 VAEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 393 Query: 391 FAVVASEVRSLAQRSAAAAKEIKVLIDDSVTRVGSGSALVAQAGATIDEVVHSVQQVSAV 450 FAVVASEVR+LAQRSAAAAKEIK LI DSV +V GS LVA+AG T++EVV+SV++V+ + Sbjct: 394 FAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDI 453 Query: 451 VTEISAAGQEQSQGIEEVNRAITQMDESTQQNAALVEQAAAAAQAMQEQAARLSAAVSVF 510 ++EI AA QEQS GIE+VN+AI QMD+ TQQNAALVE+AAAAA+++ EQA +L+ AVSVF Sbjct: 454 MSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVF 513 Query: 511 RLNGPALPGPA 521 +L+G A PA Sbjct: 514 KLDGVAASTPA 524 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 382 bits (980), Expect = e-107, Method: Compositional matrix adjust. Identities = 225/348 (64%), Positives = 279/348 (80%), Gaps = 7/348 (2%) Query: 193 VAMLAGLVVALLMGGL----LVRAISRPLQRAVKVAQGVAAGDLTQRIEV-HSQDETGQL 247 +A++ G V+A+L+G L L I+RPL A+KVA+ VA GDLT R ++ +QDE G L Sbjct: 190 MALIIGAVIAILLGTLIAWRLTVGITRPLHEALKVAESVAEGDLTARSDMAETQDEPGLL 249 Query: 248 MQALQQMNDNLQGIVGQVRLSTDTIATASSEIAHGNLDLSSRTEQQAGALEETASAMEQL 307 + AL +M NL V Q+RL TDTIATASSEIA GNLDLSSRTEQQA +LEETAS+ME+L Sbjct: 250 LSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETASSMEEL 309 Query: 308 TSTVRANAENAQQAKQLAHSASEVAVRGGQVVRQVVDTMSSINQSSNKIVDIISVIDGIA 367 TSTV+ NA+N++QA QLA +AS VAV+GG VV QVVDTM +IN S+ KIVDII VIDGIA Sbjct: 310 TSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGVIDGIA 369 Query: 368 FQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKVLIDDSVTRVGSGS 427 FQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSAAAAKEIK LI DSV +V +GS Sbjct: 370 FQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEKVDAGS 429 Query: 428 ALVAQAGATIDEVVHSVQQVSAVVTEISAAGQEQSQGIEEVNRAITQMDESTQQNAALVE 487 LVA+AG T+DE+V V++V+ ++ EI+AA QEQS GIE+VN+A++QMD+ TQQNAALVE Sbjct: 430 KLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQNAALVE 489 Query: 488 QAAAAAQAMQEQAARLSAAVSVFRL-NGPALPGPAAGVSAQA-AMALP 533 +AAAAA+++Q+QA L+ AVSVFR+ +G A AA + Q+ AM P Sbjct: 490 EAAAAAESLQDQARNLAEAVSVFRVGSGYATAQSAAPRTVQSTAMHKP 537 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.126 0.320 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 639,866 Number of extensions: 19156 Number of successful extensions: 167 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 15 Length of query: 541 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 455 Effective length of database: 716,977 Effective search space: 326224535 Effective search space used: 326224535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)