BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3847.p (570 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 453 e-129 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 397 e-112 gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 381 e-107 gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis pro... 365 e-102 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 365 e-102 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 453 bits (1166), Expect = e-129, Method: Compositional matrix adjust. Identities = 263/519 (50%), Positives = 364/519 (70%), Gaps = 6/519 (1%) Query: 12 ILAKLSIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLYEDRLVAYAYLEEIESL 71 +L ++I+ L+ MG L++LL+++G +GL ++ +N +RS+YEDR V L + +L Sbjct: 1 MLKNITIKSLLLFVMGILSLLLIATGILGLTSLDTTNKALRSVYEDRTVPIGQLNTVITL 60 Query: 72 LEGSNNGIYGIITLDSSEGWNPDEIDQRLDKIEKRLGTVAPVIKSYQATYLTAEEALLLD 131 + L +S +P + ++D IEK + ++ A+ LT E +L D Sbjct: 61 ------STINQLDLAASIYGDPGLVIPKMDAIEKHSKEINQAFDAFMASTLTPEAKVLAD 114 Query: 132 KFLGLRQRFVQEGVQPAIAALRKRSFQTADDIHGGAMRKIWEETRATLDQLKELQIRVGR 191 KF R+ F+++ +QPAIAA R + +I G M ++ RA + L +L++R + Sbjct: 115 KFAADRKIFLEKALQPAIAASRGGNVLRVTEIVNGPMEELITPVRAGVAALIDLELREAK 174 Query: 192 ELYEKEQDDYARLMFIVSSAMVAGIVLAVLEAMLLIRAISRPLGQAVEVAQAVAAGDLSR 251 + +E+ Q + + I A++ G++LA A LIR I+RPL AV++A++VAAGDL++ Sbjct: 175 KAFEESQTRFVMVRNISIGAIIFGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQ 234 Query: 252 EVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIASGNQDLAARTEQQA 311 ++ V S +ETGQ++QALK+M L VS VR T+TIT A+ +IASGN DL++RTE QA Sbjct: 235 QIHVNSTNETGQLLQALKDMNDSLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQA 294 Query: 312 ASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVREVVDTMTSINQSSN 371 SLEETAS+M +LTSTV+QNADNA QANQL SA+EVA +GG VV EVV TM SI SS Sbjct: 295 GSLEETASSMEELTSTVRQNADNARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSR 354 Query: 372 RIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRAAAAAREIKD 431 +IVDIIGVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQR+A AA+EIK Sbjct: 355 KIVDIIGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKA 414 Query: 432 LIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQEQSNGIQEVDRAIVL 491 LIDDSV KV GS LV+QAG TM+E+V SV+ V D+++EI++ASQEQS+GI++V++AI Sbjct: 415 LIDDSVHKVDAGSKLVDQAGSTMQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQ 474 Query: 492 MDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRLD 530 MD TQQNAALV+QA AAA ++Q QA +L A+ +F+LD Sbjct: 475 MDEMTQQNAALVEQAAAAAQSMQDQAVELSGAVAIFKLD 513 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 397 bits (1021), Expect = e-112, Method: Compositional matrix adjust. Identities = 242/523 (46%), Positives = 343/523 (65%), Gaps = 14/523 (2%) Query: 12 ILAKLSIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLYEDRLVAYAYLEEIESL 71 +L +SI+ RL+L M F+ ++L+ G +G++ ++ +N+ ++++Y +++ + + + + Sbjct: 1 MLKNISIKFRLLLTMVFMGMMLIVGGAMGILGVQTTNNTLQNIYVNQMPSSEAIHSMMTR 60 Query: 72 LEGSNNGIYGIITLDSSEGWNPDEIDQRLDKIEKRLGTVAPVIKSYQATYL-----TAEE 126 L + G+ + EG ++I KR + YL T EE Sbjct: 61 LLQARAGLNLVAMRPHEEGS---------ERILKRAENFYLQSEEEWKKYLSLPIETLEE 111 Query: 127 ALLLDKFLGLRQRFVQEGVQPAIAALRKRSFQTADDIHGGAMRKIWEETRATLDQLKELQ 186 + D+ R R+++E Q IAALR + +DI M +++ + D+L ELQ Sbjct: 112 RKVADEVTAKRIRYLKEAEQGLIAALRAGRNEEVEDILVNKMPPLFQSLTKSTDELVELQ 171 Query: 187 IRVGRELYEKEQDDYARLMFIVSSAMVAGIVLAVLEAMLLIRAISRPLGQAVEVAQAVAA 246 ++ Y+ Q + I ++ G++ + A LIRAI+ PL + + +A+ Sbjct: 172 MKSAATGYQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIAS 231 Query: 247 GDLSREVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIASGNQDLAAR 306 GDL+ + V+S++E G +M L++M RL V+ VR + I+ A +IA+GN DL++R Sbjct: 232 GDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSR 291 Query: 307 TEQQAASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVREVVDTMTSI 366 TEQQAASLEETAS+M +LTSTVKQN DNA QANQLA SAS VA +GG VV +VV+TM +I Sbjct: 292 TEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAI 351 Query: 367 NQSSNRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRAAAAA 426 N S+ +IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQR+AAAA Sbjct: 352 NTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAA 411 Query: 427 REIKDLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQEQSNGIQEVD 486 +EIK LIDDSV+KV G+ LV +AG TM EVV SV++VTD+++EI AASQEQS GI++V+ Sbjct: 412 KEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVN 471 Query: 487 RAIVLMDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRL 529 AIV MD TQQNAALV+QA AAA++L+ QA L + VF+L Sbjct: 472 TAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKL 514 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 381 bits (979), Expect = e-107, Method: Compositional matrix adjust. Identities = 224/365 (61%), Positives = 279/365 (76%), Gaps = 7/365 (1%) Query: 202 ARLMFIVSS--AMVAGIVLAVLEAMLLIRAISRPLGQAVEVAQAVAAGDLSREVMVRSQD 259 AR++ IV A+ GIVLA +L R+I++PL AV VA+ VA+GDL+ + V S+D Sbjct: 186 ARMLLIVLGLVALTLGIVLA----WMLTRSITKPLDYAVSVARLVASGDLTGRITVDSKD 241 Query: 260 ETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIASGNQDLAARTEQQAASLEETAS 319 ETGQ++QALK+M L ++ VR+ DTI A++ IASGN DL++RTE+QA+SLEETAS Sbjct: 242 ETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETAS 301 Query: 320 AMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVREVVDTMTSINQSSNRIVDIIGV 379 +M +LTSTVKQNADNA QANQLA +AS VA +GG VV +VVDTM IN S+ +IVDIIGV Sbjct: 302 SMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGV 361 Query: 380 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRAAAAAREIKDLIDDSVDK 439 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQR+AAAA+EIK LIDDSVDK Sbjct: 362 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDK 421 Query: 440 VGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQEQSNGIQEVDRAIVLMDSSTQQN 499 V GS LV +AG TM EVV SV++VTD++AEI AASQEQS GI++V++AI MD TQQN Sbjct: 422 VDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQN 481 Query: 500 AALVQQATAAATALQQQAQKLEQALCVFRLDDINRTGTVTSVPPVQSHQVSRATSSDAAE 559 AALV++A AAA +L +QA L QA+ +F+LD + + V + PV + + AT AA Sbjct: 482 AALVEEAAAAAESLNEQAANLAQAVSIFKLDGVANSSRVATRLPVAASN-APATRQFAAS 540 Query: 560 RVPGK 564 P K Sbjct: 541 PAPKK 545 >gi|134094864|ref|YP_001099939.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 538 Score = 365 bits (938), Expect = e-102, Method: Compositional matrix adjust. Identities = 236/522 (45%), Positives = 332/522 (63%), Gaps = 15/522 (2%) Query: 15 KLSIRVRLMLAMGFLAVLLVSSGTVGLVAIRASNHQMRSLYEDRLVAYAYLEEIESLLEG 74 ++++ RL L +G LA++ ++ G +GL I SN ++ +Y+ R VA + I+ LL Sbjct: 2 NITLKTRLGLVIGLLALISMAVGLLGLNGIGRSNGDLQQVYQHRTVALEKISRIDRLLLA 61 Query: 75 SNNGIYGIITLDSSEGWNPD--EIDQRLDKIEKRLGTVAPVIKSYQATYLTAEEALLLDK 132 + S +PD + I K + Y L +E L + Sbjct: 62 NR-------LALSEALHDPDAEKTASHTALIAKNAAEITQAWNEYMDGSLLPDERRLAEN 114 Query: 133 FLGLRQRFVQEGVQPAIAALRKRSFQTADDIHGGAMRKIWEETRATLDQLKELQIRVGRE 192 F R R VQ+G+ PA AAL+K A + +K+ R ++D L++LQ+ Sbjct: 115 FASHRARMVQDGLFPAAAALQKGQVVEAMQLQQ-QFQKLVPAVRNSIDALRKLQVDEAGL 173 Query: 193 LYEKEQDDYARLMFIVSSAMVAGIVLAVLEAMLLIRAISRPLG----QAVEVAQAVAAGD 248 YE Q Y + ++++ + AG V A L LL+R++ LG A ++ + +A GD Sbjct: 174 AYEAAQQRYLTIRNVIATVLGAGAVAATLLGFLLVRSVYAQLGGEPQYAAQIVRRIAGGD 233 Query: 249 LSREVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTDTITKAAHDIASGNQDLAARTE 308 LS ++ R D ++ A+++M L V +R ++DTI A+ IA+GN DL+ARTE Sbjct: 234 LSATIITRKGDRNS-LLAAMQDMQQNLAKTVGDIRRASDTIATASGQIAAGNIDLSARTE 292 Query: 309 QQAASLEETASAMAQLTSTVKQNADNASQANQLAASASEVATRGGDVVREVVDTMTSINQ 368 QQA+SLEETAS+M +LT+TVKQNA +A QANQLA SAS++A +G VV +VV TM SI+ Sbjct: 293 QQASSLEETASSMEELTATVKQNAGHAQQANQLAVSASDIAVQGNTVVAQVVTTMDSISA 352 Query: 369 SSNRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRAAAAARE 428 S+ RI DIIGVI+GIAFQTNILALNAAVEAAR GEQGRGFAVVA EVRSLAQR+A AA+E Sbjct: 353 SAGRIGDIIGVINGIAFQTNILALNAAVEAARVGEQGRGFAVVATEVRSLAQRSAEAAKE 412 Query: 429 IKDLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDMVAEISAASQEQSNGIQEVDRA 488 IK LIDDS++KVG G+ LV+QAG TM E+V S+ +VTD++ EI+ AS+EQ+ GI++V++A Sbjct: 413 IKSLIDDSLEKVGAGATLVDQAGSTMNEIVASIGQVTDIMGEITTASREQTAGIEQVNQA 472 Query: 489 IVLMDSSTQQNAALVQQATAAATALQQQAQKLEQALCVFRLD 530 I MD TQQNAALV++A AAA +LQ+QA L Q + VF+L+ Sbjct: 473 IGQMDRVTQQNAALVEEAAAAAGSLQEQACSLVQVVSVFKLE 514 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 365 bits (936), Expect = e-102, Method: Compositional matrix adjust. Identities = 208/319 (65%), Positives = 254/319 (79%), Gaps = 5/319 (1%) Query: 228 RAISRPLGQAVEVAQAVAAGDLSREVMVRSQDETGQVMQALKEMTARLHHIVSTVRASTD 287 R+I+RPL AVEVA+ VA GDL + V S DETGQ++QAL++M L VS VR + Sbjct: 214 RSITRPLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIE 273 Query: 288 TITKAAHDIASGNQDLAARTEQQAASLEETASAMAQLTSTVKQNADNASQANQLAASASE 347 TI A++ IA+GN DL++RTE+QA+SLEETAS+M +LTSTVKQNADNA QANQLA SAS Sbjct: 274 TIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASG 333 Query: 348 VATRGGDVVREVVDTMTSINQSSNRIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 407 VA +GG VV +VVDTM IN S+ +IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 334 VAEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 393 Query: 408 FAVVAAEVRSLAQRAAAAAREIKDLIDDSVDKVGKGSALVNQAGQTMEEVVHSVRKVTDM 467 FAVVA+EVR+LAQR+AAAA+EIK LI DSVDKV GS LV +AG TMEEVV+SV++VTD+ Sbjct: 394 FAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDI 453 Query: 468 VAEISAASQEQSNGIQEVDRAIVLMDSSTQQNAALVQQATAAATALQQQAQKLEQALCVF 527 ++EI AASQEQS GI++V++AI MD TQQNAALV++A AAA +L +QA KL +A+ VF Sbjct: 454 MSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVF 513 Query: 528 RLDDINRTGTVTSVPPVQS 546 +LD G S P ++ Sbjct: 514 KLD-----GVAASTPATKT 527 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.127 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 680,349 Number of extensions: 20012 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 109 Number of HSP's successfully gapped: 13 Length of query: 570 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 483 Effective length of database: 713,682 Effective search space: 344708406 Effective search space used: 344708406 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)