BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3844.p
         (586 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093948|ref|YP_001099023.1| hypothetical protein HEAR0702 [...    92   5e-20

>gi|134093948|ref|YP_001099023.1| hypothetical protein HEAR0702
           [Herminiimonas arsenicoxydans]
          Length = 578

 Score = 92.4 bits (228), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 147/600 (24%), Positives = 241/600 (40%), Gaps = 68/600 (11%)

Query: 20  PAPASAATRRALPERAAWLLLVLAGAAWLLPGIVGHGPWKQDETYSFGMIHHMLVSG--Q 77
           P    A+   ALP  A + L +L    ++LPG++G  PWK D+   FG++  M       
Sbjct: 3   PVRLPASATHALPRWALFALCLL----YILPGLIGRDPWKPDDAAGFGIMWTMAHGSLFD 58

Query: 78  YLVPTNAGQPFMEKPPLYYWTAVLFAKLLHPLLPYHDGARLASVFYNLVSLVFVARIAKL 137
           +L P   G    ++ PL +W   +  KL   LL     AR+A + + L+    V     L
Sbjct: 59  WLAPNIVGLAMPDEGPLAFWLGAICIKLFGWLLGDPMAARIAPISFFLLGSTSVWYTTYL 118

Query: 138 MWHQRTLMSLPVL----------------ATLALFAGSPGMVKHAHDMFTDVALVTGGTM 181
           +  +     L +                   L ++ G  G++ H+H   T+   V+    
Sbjct: 119 LGRRPEAQPLKLAFGGQPEPRDFGRTLADGALLIYLGCLGLLVHSHGTTTEALQVSLIAF 178

Query: 182 ATYGLLALALNEERRTPAWAAAVWFGLGVGITMMAKGLFVPLTFAATAMAVSAMVPACRA 241
           + Y +  L  +   R+     A+ FGL +G+ ++++G  VPL     A+ +  +V A   
Sbjct: 179 SLYTVTRLFESHSLRS-----AMAFGLVLGLLVLSRGWVVPL-----ALWLGVLVLASIR 228

Query: 242 RSYWKMIGAAVLVSLPFFVIWPTLLAQHSMPLFMEWFWDNNVGRFFGFSVNKLGSDNDHT 301
                +    V + L   V    + A   +  +     +     +  ++V ++G  +  T
Sbjct: 229 ERALLLRLILVALPLAALVAGAWIFASQQVQPYG----NAPSDAWMAWNVRQIGMPSWST 284

Query: 302 V--VLRALAGFALPGSLLALLALATGDWRQVRSARVALPLAFAAISLAVLQSSATARQLY 359
           +   L+    FA P    A+ A+     RQ  +  + LPL F A  L +   +    +  
Sbjct: 285 LQYFLKNAIWFAWPAWPFAIWAIYAWR-RQHEALHITLPLTFFASLLVLALLNPRGEEAI 343

Query: 360 LLPVLLPLAMLGARALPRLPDGFHLAWDWLSRLGFGLLAIGIWATYFISTL--PAEQHQ- 416
           LLP+L  LA+L A  LP +  G   A DW S +     A  IW  +       PA+  + 
Sbjct: 344 LLPLLPMLAILAAFGLPTMKRGAINAVDWFSVMMLSTCASFIWLGWIAKQTGWPAQIAKN 403

Query: 417 ----AIAFMGKWLPLDFVTPIQPLALLAAGSMSILWIGSLGLLRLAGK-WRGAFSWFGGI 471
               A  F  ++  L F+       + AA +   +WI    + R     WR      GGI
Sbjct: 404 AFKIAPGFKPEFNLLSFI-------VAAAATAGWIWIVHWRISRRPSVLWRAVVLSSGGI 456

Query: 472 TLMWGLAFTLLLPWADYGKSYEYVYADLKAKIGPVWREGDCMASQGLGESEAPMLYYYIG 531
            L W L  TL LPW +Y KSY  V   + A +  V R   C+ S  +G S+     Y+  
Sbjct: 457 ILCWLLLMTLWLPWGNYIKSYAGVAQQVDAALPKVKR---CVDSN-VGASQRASFAYFGN 512

Query: 532 ILHQPIDGHRKTQCRWVI-------QEMPGAHKRPHGHWILFWEGRRDGDDGQLFKIYQR 584
           +   P        C +++        +      R    W L W GRR  D  + F++Y+R
Sbjct: 513 V---PFARFGDKNCDYLLLQDHHRGNDAAQTITRNKLQWQLIWHGRRPADRDERFRLYRR 569


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.139    0.460 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,092,756
Number of extensions: 45925
Number of successful extensions: 213
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 499
Effective length of database: 713,682
Effective search space: 356127318
Effective search space used: 356127318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 131 (55.1 bits)