BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3841.p
         (97 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095718|ref|YP_001100793.1| transposase (partial) [Herminii...   133   2e-33
gi|134095298|ref|YP_001100373.1| transposase (partial) [Herminii...   132   4e-33

>gi|134095718|ref|YP_001100793.1| transposase (partial)
          [Herminiimonas arsenicoxydans]
          Length = 131

 Score =  133 bits (335), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 60/94 (63%), Positives = 80/94 (85%)

Query: 4  VALLGIIRRWYIRDHISIREIASRLDISRNTVRRYIRSDAIEPASPARHSPSSLDEFAPR 63
          +ALLGIIRRW++RD +S+RE++ RL ISRNTVRRY+R++ +EPA   R SP+SLD++A +
Sbjct: 1  MALLGIIRRWHLRDQVSLREVSKRLSISRNTVRRYLRAETVEPAYADRRSPTSLDKYAFK 60

Query: 64 LSAWLSAESIKSRKQRRTLKQMFLDLKELGYEGA 97
          LSAWL+ E+ KSRKQRRTLKQM +DL  LG+EG+
Sbjct: 61 LSAWLTTETTKSRKQRRTLKQMHIDLYALGFEGS 94


>gi|134095298|ref|YP_001100373.1| transposase (partial)
          [Herminiimonas arsenicoxydans]
          Length = 122

 Score =  132 bits (331), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 61/94 (64%), Positives = 79/94 (84%)

Query: 4  VALLGIIRRWYIRDHISIREIASRLDISRNTVRRYIRSDAIEPASPARHSPSSLDEFAPR 63
          +ALLGIIRRW++RD +S+REI+ RL ISRNTVRRY+R++ +EPA   R SP+SLD++A +
Sbjct: 1  MALLGIIRRWHLRDQVSLREISKRLGISRNTVRRYLRAETVEPAYADRRSPTSLDKYAFK 60

Query: 64 LSAWLSAESIKSRKQRRTLKQMFLDLKELGYEGA 97
          LSAWL  E+ KSRKQRRTLKQM +DL  LG+EG+
Sbjct: 61 LSAWLKTEATKSRKQRRTLKQMHIDLCALGFEGS 94


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 174,785
Number of extensions: 5652
Number of successful extensions: 23
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 2
Length of query: 97
Length of database: 1,000,347
Length adjustment: 65
Effective length of query: 32
Effective length of database: 786,172
Effective search space: 25157504
Effective search space used: 25157504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 121 (51.2 bits)