BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3837.p
         (382 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093984|ref|YP_001099059.1| putative amino acid ABC transpo...   120   1e-28
gi|134096411|ref|YP_001101486.1| putative branched chain amino a...    65   5e-12

>gi|134093984|ref|YP_001099059.1| putative amino acid ABC
           transporter [Herminiimonas arsenicoxydans]
          Length = 381

 Score =  120 bits (301), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 151/332 (45%), Gaps = 17/332 (5%)

Query: 49  HGAEMAVDDANA----LAAKKKSSYRFRLLAQDDQGTANFGVNVAHYFIKEKVAGILGPW 104
           +GA MAV+D NA    +  KK    +F+LLA+DD          A   +   V  ++G  
Sbjct: 50  NGARMAVEDLNAKGTTIGGKK---VKFQLLAEDDASDPKQATAAAQKLVDAGVVAVIGHL 106

Query: 105 SSDAAMATAELYEAAHIPQIGFTASTSQWTNQGHRMPFRVVGSTSELSAALAEVVKRPLA 164
           +S   +  + +Y  A IPQ+  +A+  ++T QG +  FRVV + ++L   L +   + L 
Sbjct: 107 NSGTTIPASRIYANAGIPQVSPSATNPKYTQQGFKTAFRVVANDAQLGQVLGQYAVKTLG 166

Query: 165 GKRVFVIHNDTVFSNAVSDELISRLGKQAGTTTMRYLVGRRSTDFNAAIKAASQYQADVV 224
           GK V VI + T +   V+DE    +    G+         ++TDFN+ + +    + D++
Sbjct: 167 GKSVAVIDDRTAYGQGVADEFAKGVKAAGGSIVASQYTNNKATDFNSILTSIKAKKPDII 226

Query: 225 VFLALFPQAAAFLDEARRARLEARLL--------LLGGATRLSLGEVDLPQAYALEYEVP 276
            F  +       L + ++  + A+ +         L G    +LG+  +  A A    VP
Sbjct: 227 FFGGMDAVGGPMLRQMKQLGINAKFMGGDGICTGSLPGLAGTALGDNQVVCAEA--GGVP 284

Query: 277 HTHCPRWKSFTQAYTKRFNEPPSTYSYYAYDAASVLIAAILQSDSTDGQRIAATLRTMHH 336
                  + F  +Y KRF       + YAYDA + ++ A+ +++S +  +    L   ++
Sbjct: 285 EARRKGVEDFRASYKKRFGVEVVYTAAYAYDATNAVVEAMKKANSWEPAKYLPELAKSNY 344

Query: 337 AGLNGTISFAPNGAHAQPRFTLYQHQRQWRQV 368
            G+ GTI+F   G       TLY  +   R++
Sbjct: 345 PGITGTIAFDAKGDIKDGTLTLYTFRGGKREM 376


>gi|134096411|ref|YP_001101486.1| putative branched chain amino acid
           binding protein [Herminiimonas arsenicoxydans]
          Length = 390

 Score = 65.5 bits (158), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 146/351 (41%), Gaps = 20/351 (5%)

Query: 21  TPARSEQL-RYVTLGLSAWLTQPIVQSAWHGAEMAVDDANALAAKKKSSYRFRLLAQDDQ 79
           TPA ++ + +   +G     T  I     + A++AV   NA     K+ Y + L++QDD+
Sbjct: 23  TPASAKDVVKIAFVGPLTGGTSSIGLGGRNSADLAVRLRNA---DPKAKYTYELVSQDDE 79

Query: 80  GTANFGVNVAHYFIKEK--VAGILGPWSSDAAMATAELYEAAHIPQIGFTASTSQWTNQG 137
              N GV VA     +K  +AG+   + S  AM T  +Y    +P + + A   + T   
Sbjct: 80  CRPNVGVQVATKIAADKNIIAGVT-HFCSAVAMGTVAVYNRFGLPVVVWGAVLPEIT--- 135

Query: 138 HRMPFRVVGSTSELSAALAEVVKRPLAG---KRVFVIHNDTVFSNAVSDELISRLGKQAG 194
           +   F+ V   +      +EV  + +A    K+  +IH+ T +    +      L K   
Sbjct: 136 YGNNFKEVHRVNGTMINQSEVAAKFMADQGYKKFAIIHDTTDYGKGHNKYFSEFLKKNGA 195

Query: 195 TTTMRYLVGRRSTDFNAAIKAASQYQADVVVFLALFPQAAAFLDEARRARLEARLLLLGG 254
           T    + V     DF+  +    + + DVV F  L P       +  +  ++A+     G
Sbjct: 196 TVLGTFGVTADQQDFSTELTKIRELKPDVVYFGGLTPLGVRIRTQMEKLGIKAQFEGTSG 255

Query: 255 ----ATRLSLGEVDLPQAYALEYEVPHTHCPRWKSFTQAYTK-RFNEPPSTYSYYAYDAA 309
               A    +GE     + A     P    P    FT  Y K +++EPP  Y  ++Y AA
Sbjct: 256 IKSDAYIQGVGEKLAEGSLAFLEGAPWEKIPGGLFFTAQYQKQKYSEPPEAYGTFSYAAA 315

Query: 310 SVLIAAILQSDSTDGQRIAATLRTMHHAG-LNGTISFAPNGAHAQPRFTLY 359
           ++++ A+ +    D +++   L    +   L G ++F  +  +  P  T Y
Sbjct: 316 NLIMDAV-EKVGPDRKKVRDVLNNTKNVDTLIGKVTFDDHRQNIVPLVTKY 365


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.131    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 619,191
Number of extensions: 21342
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 3
Length of query: 382
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 299
Effective length of database: 726,862
Effective search space: 217331738
Effective search space used: 217331738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)