BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3836.p (568 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 372 e-104 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 367 e-102 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 360 e-101 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 359 e-100 gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemo... 349 2e-97 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 372 bits (954), Expect = e-104, Method: Compositional matrix adjust. Identities = 225/367 (61%), Positives = 273/367 (74%), Gaps = 14/367 (3%) Query: 202 AKIMRPV-DQFFAMLDARTSAQV---EKARA------HSANMALLFHALIGMAL-VVLAC 250 A M+P D + ++A +AQ+ E A+ SA M L+ L+ + L +VLA Sbjct: 147 ANKMKPAADAYIQSVEAVVNAQINNFEDAKGRVDTIYQSARMLLIVLGLVALTLGIVLAW 206 Query: 251 TLMVVYKAIRDPLAHAAGVARRVAQGDLTAEINTNIKGETGELLEALRTMQAGLQTIVTD 310 L ++I PL +A VAR VA GDLT I + K ETG+LL+AL+ M L +T Sbjct: 207 ML---TRSITKPLDYAVSVARLVASGDLTGRITVDSKDETGQLLQALKDMNDSLTASITQ 263 Query: 311 VREGAHRIDNSATEIAAGTLDLSNRTEQQAGSLEETASSMEEITSTVKQNAGNARLASEL 370 VR G I ++ +IA+G LDLS+RTE+QA SLEETASSMEE+TSTVKQNA NAR A++L Sbjct: 264 VRSGVDTIATASNQIASGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQL 323 Query: 371 ASAASAVALKGGAVVSQVVETMGAINASSKKVVDIIGVIDGIAFQTNILALNAAVEAARA 430 A AS VA KGG VVS+VV+TM IN S++K+VDIIGVIDGIAFQTNILALNAAVEAARA Sbjct: 324 AVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARA 383 Query: 431 GEQGRGFAVVATEVRSLAQRSAAAAKEIKELIDNSVTKVDAGSLLVNQAGSTMQEVVSSV 490 GEQGRGFAVVA+EVRSLAQRSAAAAKEIK LID+SV KVD GS LV +AG+TM EVV SV Sbjct: 384 GEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSVDKVDTGSKLVAEAGTTMVEVVDSV 443 Query: 491 QRVTEIVADISSASQEQSAGVEQVQQAISQMDNVTQQNAALVEQASAAAESMQGQAHKLS 550 +RVT+I+A+I +ASQEQSAG+EQV QAI QMD VTQQNAALVE+A+AAAES+ QA L+ Sbjct: 444 KRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAANLA 503 Query: 551 ELVGAFK 557 + V FK Sbjct: 504 QAVSIFK 510 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 367 bits (941), Expect = e-102, Method: Compositional matrix adjust. Identities = 219/333 (65%), Positives = 259/333 (77%), Gaps = 3/333 (0%) Query: 230 SANMALLFHALIGMALVVLACTLMVVYKAIRDPLAHAAGVARRVAQGDLTAEIN-TNIKG 288 S MAL+ A+I + L L + V I PL A VA VA+GDLTA + + Sbjct: 187 SGRMALIIGAVIAILLGTLIAWRLTV--GITRPLHEALKVAESVAEGDLTARSDMAETQD 244 Query: 289 ETGELLEALRTMQAGLQTIVTDVREGAHRIDNSATEIAAGTLDLSNRTEQQAGSLEETAS 348 E G LL AL MQA L VT +R G I +++EIA+G LDLS+RTEQQA SLEETAS Sbjct: 245 EPGLLLSALGRMQANLVRTVTQIRLGTDTIATASSEIASGNLDLSSRTEQQASSLEETAS 304 Query: 349 SMEEITSTVKQNAGNARLASELASAASAVALKGGAVVSQVVETMGAINASSKKVVDIIGV 408 SMEE+TSTVKQNA N+R A++LA AAS VA+KGGAVVSQVV+TMGAIN S+KK+VDIIGV Sbjct: 305 SMEELTSTVKQNADNSRQANQLAVAASTVAVKGGAVVSQVVDTMGAINNSAKKIVDIIGV 364 Query: 409 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKELIDNSVTK 468 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVR+LAQRSAAAAKEIK LI +SV K Sbjct: 365 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEIKTLIGDSVEK 424 Query: 469 VDAGSLLVNQAGSTMQEVVSSVQRVTEIVADISSASQEQSAGVEQVQQAISQMDNVTQQN 528 VDAGS LV +AG+TM E+V V+RV +I+A+I++ASQEQS G+EQV QA+SQMD VTQQN Sbjct: 425 VDAGSKLVAEAGTTMDEIVDGVKRVADIMAEITAASQEQSDGIEQVNQAVSQMDQVTQQN 484 Query: 529 AALVEQASAAAESMQGQAHKLSELVGAFKTKAG 561 AALVE+A+AAAES+Q QA L+E V F+ +G Sbjct: 485 AALVEEAAAAAESLQDQARNLAEAVSVFRVGSG 517 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 360 bits (925), Expect = e-101, Method: Compositional matrix adjust. Identities = 209/301 (69%), Positives = 246/301 (81%) Query: 257 KAIRDPLAHAAGVARRVAQGDLTAEINTNIKGETGELLEALRTMQAGLQTIVTDVREGAH 316 ++I PL +A VAR VA GDL I N ETG+LL+ALR M GL V++VR G Sbjct: 214 RSITRPLEYAVEVARTVAGGDLRNRIEVNSSDETGQLLQALRDMNDGLVKSVSEVRTGIE 273 Query: 317 RIDNSATEIAAGTLDLSNRTEQQAGSLEETASSMEEITSTVKQNAGNARLASELASAASA 376 I ++ +IAAG LDLS+RTE+QA SLEETASSMEE+TSTVKQNA NAR A++LA +AS Sbjct: 274 TIATASNQIAAGNLDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASG 333 Query: 377 VALKGGAVVSQVVETMGAINASSKKVVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 436 VA KGG VVSQVV+TM IN+S+KK+VDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG Sbjct: 334 VAEKGGVVVSQVVDTMEDINSSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRG 393 Query: 437 FAVVATEVRSLAQRSAAAAKEIKELIDNSVTKVDAGSLLVNQAGSTMQEVVSSVQRVTEI 496 FAVVA+EVR+LAQRSAAAAKEIK LI +SV KVD GS LV +AG TM+EVV+SV+RVT+I Sbjct: 394 FAVVASEVRNLAQRSAAAAKEIKTLIGDSVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDI 453 Query: 497 VADISSASQEQSAGVEQVQQAISQMDNVTQQNAALVEQASAAAESMQGQAHKLSELVGAF 556 +++I +ASQEQSAG+EQV QAI QMD VTQQNAALVE+A+AAAES+ QA KL+E V F Sbjct: 454 MSEIMAASQEQSAGIEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAGKLAEAVSVF 513 Query: 557 K 557 K Sbjct: 514 K 514 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 359 bits (922), Expect = e-100, Method: Compositional matrix adjust. Identities = 212/329 (64%), Positives = 252/329 (76%), Gaps = 7/329 (2%) Query: 236 LFH-----ALIG--MALVVLACTLMVVYKAIRDPLAHAAGVARRVAQGDLTAEINTNIKG 288 LFH A++G + L+ +A + +AI PL +A GDLT+ I + Sbjct: 185 LFHYFRIIAVVGVLLGLIGVAIYAFFLIRAITGPLKEMLLHFDTIASGDLTSNIEVKSRN 244 Query: 289 ETGELLEALRTMQAGLQTIVTDVREGAHRIDNSATEIAAGTLDLSNRTEQQAGSLEETAS 348 E G L+ L+ MQ L V VREG+ I + TEIAAG LDLS+RTEQQA SLEETAS Sbjct: 245 EMGTLMLGLQKMQKRLTDTVAQVREGSMAISTATTEIAAGNLDLSSRTEQQAASLEETAS 304 Query: 349 SMEEITSTVKQNAGNARLASELASAASAVALKGGAVVSQVVETMGAINASSKKVVDIIGV 408 SMEE+TSTVKQN NAR A++LA++ASAVA+KGGAVVS VV TM AIN S++K+VDIIGV Sbjct: 305 SMEELTSTVKQNTDNARQANQLATSASAVAVKGGAVVSDVVNTMDAINTSARKIVDIIGV 364 Query: 409 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKELIDNSVTK 468 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSAAAAKEIK LID+SV K Sbjct: 365 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKHLIDDSVNK 424 Query: 469 VDAGSLLVNQAGSTMQEVVSSVQRVTEIVADISSASQEQSAGVEQVQQAISQMDNVTQQN 528 VDAG+ LV +AG+TM EVV SV+RVT+I+++I +ASQEQSAG+EQV AI QMD VTQQN Sbjct: 425 VDAGTRLVAEAGTTMTEVVDSVKRVTDIMSEILAASQEQSAGIEQVNTAIVQMDEVTQQN 484 Query: 529 AALVEQASAAAESMQGQAHKLSELVGAFK 557 AALVEQA+AAA S++ QA LS +V FK Sbjct: 485 AALVEQAAAAASSLRDQATNLSTVVSVFK 513 >gi|134093308|ref|YP_001098383.1| putative methyl-accepting chemotaxis sensory transducer [Herminiimonas arsenicoxydans] Length = 633 Score = 349 bits (896), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 197/318 (61%), Positives = 246/318 (77%) Query: 245 LVVLACTLMVVYKAIRDPLAHAAGVARRVAQGDLTAEINTNIKGETGELLEALRTMQAGL 304 L++ AC + K + PLA A +AR++A GDLT+ + T E G LL A+ ++ GL Sbjct: 188 LLLTACLYAGIRKTVTGPLAQATQLARQLATGDLTSRLETKRTDEIGLLLRAVNSIGQGL 247 Query: 305 QTIVTDVREGAHRIDNSATEIAAGTLDLSNRTEQQAGSLEETASSMEEITSTVKQNAGNA 364 +V ++R G + EIAAG LDLS+RTEQQA SLEETAS+MEE+TSTVK+NA NA Sbjct: 248 ANVVWNIRHGTETLATETREIAAGNLDLSSRTEQQASSLEETASAMEEMTSTVKENAANA 307 Query: 365 RLASELASAASAVALKGGAVVSQVVETMGAINASSKKVVDIIGVIDGIAFQTNILALNAA 424 A+ LA A+ VA+KGG VV++VV TM +IN SSKK+ DII VIDGIAFQTNILALNAA Sbjct: 308 EQANALAHTAAEVAIKGGNVVAEVVHTMDSINQSSKKIADIISVIDGIAFQTNILALNAA 367 Query: 425 VEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKELIDNSVTKVDAGSLLVNQAGSTMQ 484 VEAARAGEQGRGFAVVA+EVR+LAQRS+AAA+EIK LI++SV+KV +GS LV AG+TM Sbjct: 368 VEAARAGEQGRGFAVVASEVRNLAQRSSAAAREIKTLIEDSVSKVQSGSKLVAHAGATMD 427 Query: 485 EVVSSVQRVTEIVADISSASQEQSAGVEQVQQAISQMDNVTQQNAALVEQASAAAESMQG 544 EVVSS+QRV I+ +ISSAS+EQS G+EQV QAI+QMD VTQQNAALVEQA+A+AES+Q Sbjct: 428 EVVSSIQRVDNIMGEISSASREQSIGIEQVNQAIAQMDQVTQQNAALVEQAAASAESLQN 487 Query: 545 QAHKLSELVGAFKTKAGS 562 Q +L+ +V F K+GS Sbjct: 488 QTTELNNVVSVFTIKSGS 505 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.126 0.328 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 750,781 Number of extensions: 25622 Number of successful extensions: 195 Number of sequences better than 1.0e-08: 15 Number of HSP's gapped: 158 Number of HSP's successfully gapped: 15 Length of query: 568 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 481 Effective length of database: 713,682 Effective search space: 343281042 Effective search space used: 343281042 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)