BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3835.p (362 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two... 102 3e-23 gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two... 91 7e-20 gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Hermin... 81 7e-17 gi|134093857|ref|YP_001098932.1| putative two-component system s... 76 2e-15 gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two... 76 2e-15 >gi|134094833|ref|YP_001099908.1| sensory histidine kinase in two-component regulatory system wtih KdpE, regulation of potassium translocation [Herminiimonas arsenicoxydans] Length = 921 Score = 102 bits (255), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 116/235 (49%), Gaps = 18/235 (7%) Query: 139 LERVQQER--NFWNAAIAHELRTPVTILRGRLQGLSDGVFQPDPALFAS-------LLVQ 189 L R++ ER N +A++H+LRTP+T L GLS+ + P L +S L + Sbjct: 676 LVRMESERLRNSLLSALSHDLRTPLT----SLVGLSESLTMSKPPLTSSQQELAQALHDE 731 Query: 190 VEGLGRLIEDLRIVGLAESGHLRVQLQQTDLQQEIVTVLKACESALQDKGFAIALALRLQ 249 + L+ +L + +SG ++ LQ ++ + + L+A +SA+ LA L Sbjct: 732 ARRMSNLVSNLLDMARIQSGEVKFNLQWLQFEEVVGSALRASQSAIAHHEIKTRLAPDLP 791 Query: 250 RTVCDPVRIRQALLALLENALQHATPGALRISTGSVDGQHYLRVE--DSGPGLAATDAQM 307 D V I + L L+ENA ++ TP RI + +L V D+GPGL A + Sbjct: 792 LVRFDAVLIERVLCNLIENAAKY-TPAGSRIVIAAEISGRFLEVSVYDNGPGLPAGQEEA 850 Query: 308 IFDAFQRGPRAASAPHKGSGLGLAVVRAIASAHHGTVDCQPSALGGTCFQLRWPV 362 IFD F RG R ++ P G GLGLA+ RAI AH GT+ S GG P+ Sbjct: 851 IFDKFTRGERESATP--GVGLGLAICRAIVEAHQGTIRAAHSPDGGASINFTLPL 903 >gi|134093798|ref|YP_001098873.1| sensory histidine kinase in two-component regulatory system with CusR, regulation of copper resistance, senses copper ions [Herminiimonas arsenicoxydans] Length = 482 Score = 91.3 bits (225), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 9/281 (3%) Query: 67 WSWILVTTLIGVAIAVWVAMRLSRRILTPLNSVATSLRRVAQGDLTARAAAERQPLDEAS 126 W L+ LI + +A W A++ R P+ V+ +R + L R + P+ E + Sbjct: 179 WWATLIVALIALVVA-WFAVQWGHR---PIRKVSREIRAIRSSQLDVRLSPTDVPI-ELA 233 Query: 127 QLISDFNAMAERLERVQQERNFWNAAIAHELRTPVTILRGRLQGLSDGVFQPDP--ALFA 184 +L FN M R+E + ++A IAHELRTPVT L + Q V D + Sbjct: 234 ELAVSFNDMLGRIEDGFAKLANFSADIAHELRTPVTNLSTQTQVALSQVRSADEYREVLY 293 Query: 185 SLLVQVEGLGRLIEDLRIVGLAESGHLRVQLQQTDLQQEIVTVLKACESALQDKGFAIAL 244 S L + + L +I D+ + E+ ++L TD+ + + E +D + L Sbjct: 294 SNLEEFDRLSLMIGDMLFLAQTENDPRNLRLTNTDITGLVQGLFDYFEVLAEDANITLTL 353 Query: 245 ALRLQRTVCDPVRIRQALLALLENALQHATPGALRISTGSVDGQH-YLRVEDSGPGLAAT 303 + +++ + D + +AL LL NA++++ PG+ I D + + VE+ G +A Sbjct: 354 SGQVKPIIADRDMMLRALSNLLSNAIRYSLPGSSVIVRLHQDAKRTTICVENPGEQIAED 413 Query: 304 DAQMIFDAFQRGPRAASAPHKGSGLGLAVVRAIASAHHGTV 344 D +FD F R + G+GLGLA+V++I AH G V Sbjct: 414 DLPKLFDRFFR-VDPSRQRKSGAGLGLAIVKSIIEAHDGKV 453 >gi|134094769|ref|YP_001099844.1| sensor kinase CopS like [Herminiimonas arsenicoxydans] Length = 458 Score = 81.3 bits (199), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 82/308 (26%), Positives = 145/308 (47%), Gaps = 33/308 (10%) Query: 69 WILVTTLIGVAIAVWVAMRLSRRILTPLNSVATSLRRVAQGDLTARAAAERQPLD----E 124 +++V + V + W A R+ L+PL ++A + V T++ ER P+D E Sbjct: 164 YVMVAAIATVMLGWWAA----RQGLSPLRTMAARAQTV-----TSQNMNERMPVDAVPTE 214 Query: 125 ASQLISDFNAMAERLERVQQERNFWNAAIAHELRTPVTILRGRL-----QGLSDGVFQPD 179 + L NAM +RL+ ++A +AHELRTP++ + + Q S ++ Sbjct: 215 MTDLAVKLNAMLDRLQNDIARLTEFSADLAHELRTPISNMLTQTHVVLNQSRSTADYRDS 274 Query: 180 PALFASLLVQVEGLGRLIEDLRIVGLAESGHLRVQLQQTDLQQEIVTVLKACESALQDKG 239 +S +++ LG I D+ + E+G + + ++ +E +L+ E+ ++K Sbjct: 275 ---LSSNAEELQRLGNTISDMLFLAQTENGLALPSVAKLNMARECQALLEFYEALAEEK- 330 Query: 240 FAIALALRLQ---RTVCDPVRIRQALLALLENALQHATP--GALRISTGSVDGQHYLRVE 294 + LR + + D + R+AL LL NA+++ TP G + I S + + V+ Sbjct: 331 ---KVVLRCEGDAVVIGDQLMFRRALNNLLSNAIRY-TPSYGTISIKITSAESGTTITVQ 386 Query: 295 DSGPGLAATDAQMIFDAFQRGPRAASAPHKGS-GLGLAVVRAIASAHHGTVDCQPSALGG 353 + G + A +FD F R ++ S GLGL++ RAI AH G+V S Sbjct: 387 NDGEEIPAEIQPHLFDRFFRADKSRKKSESDSAGLGLSITRAIMQAHGGSVSV-VSRDSK 445 Query: 354 TCFQLRWP 361 T F L +P Sbjct: 446 TAFSLYFP 453 >gi|134093857|ref|YP_001098932.1| putative two-component system sensory histidine kinase [Herminiimonas arsenicoxydans] Length = 467 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 85/285 (29%), Positives = 127/285 (44%), Gaps = 24/285 (8%) Query: 90 RRILTPLNSVATSLRRVAQGDLTARAAAERQPLDEASQLISDFNAMAERLERVQQERNFW 149 RR L PL +A V G L + + P E LI FNAM RL+ + + Sbjct: 194 RRGLKPLRKMARHAALVRPGKLQHQLDDQGAP-SELLPLIHAFNAMLGRLQEGYLRLSQF 252 Query: 150 NAAIAHELRTPVTILRGRLQGLSDGVFQPDPA-----LFASLLVQVEGLGRLIEDLRIVG 204 + +AHE RTPVT L G+ Q + +P A L S + ++E L R+I+ + + Sbjct: 253 STDLAHEFRTPVTSLLGQSQV---ALGRPRSADEYKQLVISNMEELERLSRMIDSMLFLA 309 Query: 205 LAESGHLRVQLQQTDLQQEIVTVLKACESALQDKGFAIALALRLQR---TVCDPVRIRQA 261 E + V +Q E + E ++G L L Q + D +R+A Sbjct: 310 RVEREQMSVARYPLLVQDEFDRLCNFFEDMSDERG----LILSNQGDGIVMADAQLLRRA 365 Query: 262 LLALLENALQHATPGALRISTGSVDGQHY--LRVEDSGPGLAATDAQMIFDAFQRGPRAA 319 L LL NA++HA G+ I S + L V ++G + +FD F R A Sbjct: 366 LSNLLSNAIRHADKGST-IELRSRQEAEFVVLSVTNTGATIGPEHMPHLFDRFYRADSAR 424 Query: 320 SAPHKGSGLGLAVVRAIASAHHG--TVDCQPSALGGTCFQLRWPV 362 + + +GLGL++VRAI + HHG TV Q T +L +P Sbjct: 425 TDSSESTGLGLSIVRAIMTLHHGRATVTSQDKI---THLELYFPT 466 >gi|134095288|ref|YP_001100363.1| sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing [Herminiimonas arsenicoxydans] Length = 430 Score = 76.3 bits (186), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/297 (25%), Positives = 140/297 (47%), Gaps = 21/297 (7%) Query: 78 VAIAVWVAMRLSRRILTPLNSVATSLRRVAQGDLTARAAAERQPLDEASQLISDFNAMAE 137 +A+ +W+ + R L PL+ +A ++ R + L ER P E +++ N + Sbjct: 118 LALFIWIVVG---RSLYPLHHLARAIGRRSSNALEP-LPGERYP-PELQPMLAALNDLLT 172 Query: 138 RLERVQQERNFWNAAIAHELRTPVTILRGRLQGLS-DGVFQPDPALFASLLVQVEGLGRL 196 RL++ + + A AHELRTP+T L+ +LQ + + + F L ++ L Sbjct: 173 RLDQTLVTQRAFVADAAHELRTPLTALKLQLQLVERENDDRQRATGFRKLHERLNRATHL 232 Query: 197 IEDLRIVGLAESGHLRVQLQQTDLQQEIVTVLKACESALQDKGFAIALALRLQR------ 250 ++ L + E Q+ DL+Q V+ + KG + +A+ + Sbjct: 233 VQQLLTLARHEYRIADRSSQKIDLRQLTARVVSDYAPQAEHKGVDLGIAINDDQGSDAAM 292 Query: 251 TVCDPVRIRQALLALLENALQHATPGALRI----STGSVDGQHYLRVEDSGPGLAATDAQ 306 + +R L L++NA+++ TP R+ +T + D LRV+D+GPG+ D + Sbjct: 293 ITGNQDSLRILLGNLVDNAVRY-TPSHGRVDVTVNTSTADHTVLLRVKDNGPGIPVQDQE 351 Query: 307 MIFDAFQRGPRAASAPHKGSGLGLAVVRAIASAHHGTVDCQPS-ALGGTCFQLRWPV 362 +FD F R + GSGLGL + + IA+ H T++ + + GG +R+P+ Sbjct: 352 RVFDRFYRRDGTGES---GSGLGLFIAKTIATQHEATIELSTADSKGGLIVTVRFPL 405 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 670,561 Number of extensions: 25833 Number of successful extensions: 198 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 183 Number of HSP's successfully gapped: 16 Length of query: 362 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 279 Effective length of database: 726,862 Effective search space: 202794498 Effective search space used: 202794498 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 129 (54.3 bits)