BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3834.p (251 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094343|ref|YP_001099418.1| response regulator [Herminiimon... 115 1e-27 gi|134095106|ref|YP_001100181.1| osmolarity response regulator [... 114 7e-27 gi|134094768|ref|YP_001099843.1| response regulator in two-compo... 111 3e-26 gi|134093856|ref|YP_001098931.1| two-component system response r... 111 3e-26 gi|134096137|ref|YP_001101212.1| response regulator [Herminiimon... 106 1e-24 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 115 bits (289), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 119/234 (50%), Gaps = 21/234 (8%) Query: 24 ILIAEDAPEIAEILAAYLARSGMRSVHAADGAKALELHLSLKPDLVLLDIQMPQVNGWQV 83 ILI ED P I E++ L +G +A + P L+LLD +P +G ++ Sbjct: 8 ILIVEDEPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLPDQSGLRL 67 Query: 84 LSQIR---QRDNTPVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSQ 140 LS+IR Q + P+IMLTA + DK+ GL GADDYV KPF+P E+ AR+ A+LRR Sbjct: 68 LSRIRADRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKT 127 Query: 141 PREDREERRI--LRVPPFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFS 198 P + + + P ++ +I H EFKLL P RVFS Sbjct: 128 PEHAQTLMTAGSISLDPISCSVSMNDEKIDI---GH------AEFKLLKFFLAHPDRVFS 178 Query: 199 RAELLASCLPEGDTL---ERTVDSHVSKLRKKLEDLGIAGIPVSIRGVGYRFQQ 249 R++LL GD + ERTVD HV +LRK L++ + ++R VGY + Sbjct: 179 RSQLLDKVW--GDHVVIEERTVDVHVLRLRKALKE--AEHLIKTVRSVGYMLSE 228 >gi|134095106|ref|YP_001100181.1| osmolarity response regulator [Herminiimonas arsenicoxydans] Length = 255 Score = 114 bits (284), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/215 (35%), Positives = 114/215 (53%), Gaps = 11/215 (5%) Query: 40 YLARSGMRSVHAADGAKALELHLSLKPDLVLLDIQMPQVNGWQVLSQIR-QRDNTPVIML 98 YL+ G V A +L L + DL++LD+ +P +G + ++R D TP+IML Sbjct: 38 YLSEQGFNVVTAESAQAMNKLWLRERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPIIML 97 Query: 99 TALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSQPRE----DREERRILRVP 154 TA +DVD++ GL +GADDY+ KPFNP E+VAR+ AVLRR P E E + Sbjct: 98 TAKGEDVDRIVGLEMGADDYIAKPFNPRELVARISAVLRRIGPDEAPGAPSETPQSFTFG 157 Query: 155 PFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRAELLASCLP-EGDTL 213 F +D ++ T+ LT EF +L AR R+ SR +L+ E + Sbjct: 158 EFTLDL----GTRTLKKNDETVPLTTGEFSVLKVFARHARQPLSREKLMELARGREYEVF 213 Query: 214 ERTVDSHVSKLRKKLE-DLGIAGIPVSIRGVGYRF 247 +R++D +S+LRK +E D ++ G+GY F Sbjct: 214 DRSLDVQISRLRKLIEPDPSTPLYIQTVWGLGYVF 248 >gi|134094768|ref|YP_001099843.1| response regulator in two-component regulatory system with CusS, regulation of copper resistance [Herminiimonas arsenicoxydans] Length = 230 Score = 111 bits (278), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 79/227 (34%), Positives = 120/227 (52%), Gaps = 15/227 (6%) Query: 24 ILIAEDAPEIAEILAAYLARSGMRSVHAADGAKALELHLSLKPDLVLLDIQMPQVNGWQV 83 +LI ED + E L L +G +A +G L ++ DL++LD+ +P ++GW++ Sbjct: 3 LLIVEDEVKTGEYLQQGLMEAGFAVDYANNGLDGHHLAVTGNYDLIILDVMLPDIDGWKI 62 Query: 84 LSQIRQR-DNTPVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRS--Q 140 L +R +N P + LTA D D++ GL +GADDYVVKPF +E++ARV +LRR Sbjct: 63 LQALRNAGNNVPALFLTARDGVADRVKGLELGADDYVVKPFAFSELLARVRTLLRRGIPS 122 Query: 141 PREDREERRILRVPPFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRA 200 P DR ++V V+D + A L LT EF LL L R V R+ Sbjct: 123 PLVDR-----MQVSDLVLDLARRAATR----AGKRLTLTNKEFLLLEFLVRHKGEVLPRS 173 Query: 201 ELLASCLPEGDTLERT--VDSHVSKLRKKLEDLGIAGIPVSIRGVGY 245 L+AS + + + T +D + +LR K++D + +IRGVGY Sbjct: 174 -LIASQIWDINFNSDTNVIDVAIRRLRSKMDDDYEPKLISTIRGVGY 219 >gi|134093856|ref|YP_001098931.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 231 Score = 111 bits (278), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 122/228 (53%), Gaps = 16/228 (7%) Query: 24 ILIAEDAPEIAEILAAYLARSGMRSVHAADGAKALELHLSLKPDLVLLDIQMPQVNGWQV 83 IL+ ED P+I + L LA SG A +G L + DL++LD+ +P ++GW++ Sbjct: 3 ILVIEDEPKIGDYLVRGLAESGFTVCLARNGRDGLFMATHEAVDLIVLDMMLPLLSGWEL 62 Query: 84 LSQIRQ---RDNTPVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRSQ 140 L+ +R + + PVI LTA + D++ GL +GADDY++KPF E++AR+ +LRRS Sbjct: 63 LTALRSQADKQHIPVICLTARGEVEDRVKGLELGADDYLIKPFAFVELLARIRTLLRRSP 122 Query: 141 PREDREERRILRVPPFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSRA 200 R++ +R+ ID + + + + LT EF LL LAR V SR+ Sbjct: 123 VRDE----DFIRIGDMEIDVMKRKVMRN----GKRITLTAKEFGLLHLLARRQSEVLSRS 174 Query: 201 ELLASCLP---EGDTLERTVDSHVSKLRKKLEDLGIAGIPVSIRGVGY 245 + + E DT +D+ V +LR K++D + + RG+GY Sbjct: 175 VIASQVWDINFESDT--NVIDAAVRRLRSKIDDPFETKLIHTQRGMGY 220 >gi|134096137|ref|YP_001101212.1| response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 106 bits (265), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 121/235 (51%), Gaps = 25/235 (10%) Query: 28 EDAPEIAEILAAYLARSGMRSVHAADGAKALEL--HLSLKPD--LVLLDIQMPQVNGWQV 83 ED +A ++A YL ++G H+A A+ L+ H S +VLLD+ +P +G V Sbjct: 3 EDDQRLAAMVATYLGQNGFDVQHSATAAEGLQQLQHASAGESFAIVLLDLMLPDADGLDV 62 Query: 84 LSQIRQR----DNTPVIMLTALDQDVDKLTGLRIGADDYVVKPFNPAEVVARVEAVLRRS 139 QIR + P++MLTA +D++ GL +GADDY+ KPF P E++AR+ AVLRR Sbjct: 63 CRQIRAFPAPLNTLPIVMLTAKGDPMDRVVGLELGADDYIPKPFEPRELLARLRAVLRR- 121 Query: 140 QPREDREERRILRVPPFVIDFEQHEAVAEIEGVSHTLVLTLTEFKLLAQLARAPRRVFSR 199 Q + +LR ID + I +T +F LLA +A RV SR Sbjct: 122 QHTTPATDGHVLRFGRLEIDLDAR----MIRLDDQDKPVTSYQFNLLAAMAERAGRVLSR 177 Query: 200 AELLASCLPEG-DTLERTVDSHVSKLRKKLEDLGIAGIP------VSIRGVGYRF 247 +L+ + E + +R++D H+ +LR +ED P +++RG GY F Sbjct: 178 EQLMDAVKGEPLEAFDRSIDVHIGRLRAAIED-----DPKQPKRIITVRGAGYVF 227 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 447,204 Number of extensions: 16909 Number of successful extensions: 156 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 26 Length of query: 251 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 172 Effective length of database: 740,042 Effective search space: 127287224 Effective search space used: 127287224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)