BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3831.p (540 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094727|ref|YP_001099802.1| glucan biosynthesis protein D [... 382 e-107 gi|134096439|ref|YP_001101514.1| glucan biosynthesis protein G [... 319 3e-88 >gi|134094727|ref|YP_001099802.1| glucan biosynthesis protein D [Herminiimonas arsenicoxydans] Length = 528 Score = 382 bits (980), Expect = e-107, Method: Compositional matrix adjust. Identities = 237/526 (45%), Positives = 306/526 (58%), Gaps = 28/526 (5%) Query: 13 AASALAALGVSPQALAAQGMQMGRAQPFSFEQLIARARDMARTPYQAPPAVPAAILDQID 72 +A L A G +P L +G+A PF + L RAR +A PY P A + +D Sbjct: 19 SAPQLYAAGSAPAKLKT----LGKAAPFDYAWLKGRARALAGQPYHFPSIEVPAAVKALD 74 Query: 73 YDAHGKIHFKTDLAVFAQGPGAFPLTFFHLGKFFRVPVRMFIL-DGQGDATVPVAARELS 131 +D + I ++ D A++ F FFHLG + V++ L DG+ AREL+ Sbjct: 75 WDQYQSIAYRDDHALWGGDKLRFQTKFFHLGMYATQSVKIHELEDGK--------ARELA 126 Query: 132 YRDDYFDM-PADSPAHRLPPGSGFAGFRFQESRLADQSRKDWRKNDWVAFLGASYFRAIG 190 Y F+ + LP GFAGFR D R D AFLGASYFRA+G Sbjct: 127 YDPAMFNYGKSGLKGSDLPKDLGFAGFRVNFH--TDLVR------DVAAFLGASYFRAVG 178 Query: 191 DLYQYGLSARGIAIDVAQADRPEEFPDFTQFFFEPQAPGSETVVVYALLDGPSITGAYRF 250 +QYGLSARG+AID +RPEEFP FT+F+ E A S +VVYALLD PSI GAYRF Sbjct: 179 GDWQYGLSARGLAIDCGM-ERPEEFPRFTEFWLERPALQSGKLVVYALLDSPSIAGAYRF 237 Query: 251 ALQRGAGVGMEIDKALFLRRDVARLGLAPTTSMYWFSETVKGTGVDWRPEVHDSDGLAIW 310 + GA + M+ID AL+ R+ + R+G+AP TSM+ +E + DWRPE+HDSDGLA+ Sbjct: 238 EIMPGATLLMDIDLALYPRKAIERMGIAPLTSMFLTAENDRRISNDWRPEIHDSDGLAMN 297 Query: 311 SGAGEHLWRPLNNPPRTMASAFGDQHLRGFGLLQRDRDFDHYL-DGVHYERRPSLWVEPL 369 +G GE +WRPL NP +A+ D+ RGFGL+QRDR+FDHY DGV YERRPSLWVEP Sbjct: 298 TGKGEWIWRPLVNPEHLRFNAYVDESPRGFGLMQRDRNFDHYQDDGVFYERRPSLWVEPK 357 Query: 370 GDWGEGAVQLIELRTDDEIHDNIVAMWVPKAPARAGNSYRLRYRLYWQKDEPFPTPLARC 429 WG+G++QL+E+ T DE DNIVA W P+A + G Y+LYW P A Sbjct: 358 SGWGKGSIQLVEIPTVDETFDNIVAFWNPEAKPQPGQELLFGYKLYWGSKMPALPQAATV 417 Query: 430 VATRLGRGGQPGQARPQQVRKFMVEFKGAPLENLPFGVKPEAVITASRGSISYVYTEALP 489 ATR G GG G+ R +F V+F G L L VK E VI+A++G+I T A P Sbjct: 418 TATRTGIGGVVGKKRTYFSWRFAVDFVGGDLALLGKNVKVEPVISATQGTIE--ITSARP 475 Query: 490 NGVAGHWRAQFDL-TADG-QEPVELRLFLRHQGQALSETWLFQYHP 533 +RA FDL AD Q ++LRL+L GQ LSETWL+Q+ P Sbjct: 476 LDDVKGYRAMFDLKIADNIQGAIDLRLYLSADGQTLSETWLYQWTP 521 >gi|134096439|ref|YP_001101514.1| glucan biosynthesis protein G [Herminiimonas arsenicoxydans] Length = 510 Score = 319 bits (817), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 190/496 (38%), Positives = 270/496 (54%), Gaps = 21/496 (4%) Query: 37 AQPFSFEQLIARARDMARTPYQAPPAVPAAILDQIDYDAHGKIHFKTDLAVFAQGPGAFP 96 A F F + RA+ +A T Y+ P + L+ +DYD + I +K + A + F Sbjct: 28 ALAFDFNDVAKRAKQLAATSYKEPQKNISKGLENLDYDQYRDIRYKRESAYWRSAKLPFE 87 Query: 97 LTFFHLGKFFRVPVRMFILDGQGDATVPVAARELSYRDDYFDMPADSPAHRLPPGSGFAG 156 LTFFH G+ F V++ + G +P AR FD A+ + + +GF+G Sbjct: 88 LTFFHQGRQFESAVKINEVTGNRARPIPFDARA-------FDYGANKLSAQDLKHAGFSG 140 Query: 157 FRFQESRLADQSRKDWRKNDWVAFLGASYFRAIGDLYQYGLSARGIAIDVAQADRPEEFP 216 FR + K K++ V FLGASY RA+G YGLSARG+A+D A + EEFP Sbjct: 141 FRVHYAL-----NKPTYKDELVVFLGASYLRAVGKQQIYGLSARGLAVDTA-LNSGEEFP 194 Query: 217 DFTQFFFEPQAPGSETVVVYALLDGPSITGAYRFALQRGAGVGMEIDKALFLRRDVARLG 276 F +F+ E A S+ + +YALLD ++GAYRF ++ G E+ L+LR +V++LG Sbjct: 195 RFVEFWIERPAANSKQLTIYALLDSRRVSGAYRFIVKPGEQTITEVKSQLYLRENVSKLG 254 Query: 277 LAPTTSMYWFSETVKGTGVDWRPEVHDSDGLAIWSGAGEHLWRPLNNPPRTMASAFGDQH 336 +AP TSMY+F E + D+RPEVHDSDGL+I SG GE +WRPL NP R + +++ + Sbjct: 255 IAPLTSMYFFGENQRAAVEDYRPEVHDSDGLSIQSGTGEWIWRPLVNPKRLLVTSYTLSN 314 Query: 337 LRGFGLLQRDRDFDHYLD-GVHYERRPSLWVEPLGDWGEGAVQLIELRTDDEIHDNIVAM 395 GFGL+QRD +Y D YE RPS WVEP+G WG G V+L+++ T +E +DNIV+ Sbjct: 315 PAGFGLMQRDEKQANYEDLEARYEARPSAWVEPMGKWGAGRVELVQIPTPNEFNDNIVSY 374 Query: 396 WVPKAPARAGNSYRLRYRLYWQKDEPFPTPLARCVATRLGRGGQPGQARPQQVRKFMVEF 455 WVP + G YR+ W K PL+ TR G G +P V+F Sbjct: 375 WVPDQLPKPGQPINFDYRMSWHKGAQKVPPLSWVTQTRRGHG---YLRKPDDSIALFVDF 431 Query: 456 KGAPLENLPFGVKPEAVITA-SRGSISYVYTEALPNGVAGHWRAQFDL-TADGQEPVELR 513 +G + LP K + ++A S G I + + + N G WRA + D ++PVELR Sbjct: 432 EGPIFKKLPKDAKIDVRVSADSNGEI--LESHVVQNPATGGWRAALRIRRVDDKKPVELR 489 Query: 514 LFLRHQGQALSETWLF 529 FL LSETW + Sbjct: 490 GFLHTVNTTLSETWSY 505 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.139 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,123,861 Number of extensions: 51405 Number of successful extensions: 124 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 2 Length of query: 540 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 454 Effective length of database: 716,977 Effective search space: 325507558 Effective search space used: 325507558 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)