BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3830.p
         (275 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094334|ref|YP_001099409.1| putative L-asparaginase; putati...   170   6e-44

>gi|134094334|ref|YP_001099409.1| putative L-asparaginase; putative
           signal peptide protein [Herminiimonas arsenicoxydans]
          Length = 349

 Score =  170 bits (431), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 106/276 (38%), Positives = 163/276 (59%), Gaps = 11/276 (3%)

Query: 3   IASENMNNDAWLKLAKRVNTLLAQSDVDGIVITHGTDTIEETAYFLDLVVKSKKPVVIVG 62
           + S+ M+   W+ L K V T L + +V G +++HGTDT+EETAY+LDL VKS KPV+++G
Sbjct: 77  VPSDYMDPTRWVALTKAVQTALDRPEVAGAIVSHGTDTLEETAYWLDLTVKSSKPVILIG 136

Query: 63  AMRPSTAISADGPINLYNAVLLAGSKEAVGKGVLVALNDQINAGREVTKTNTSTMDTFKT 122
           A R ++    DGP NL NAV +A   ++  KGVL+A+N+QINA R VTKT+T+ ++TFK+
Sbjct: 137 AQRNASVSDFDGPRNLLNAVRIAVDTQSKDKGVLLAMNNQINAARSVTKTHTANVETFKS 196

Query: 123 PELGFLGYIQGNKPYFYRQSTRKNTVDTPFDIMNLDKLPQVDIVYGYANMNPIALNAFVA 182
            + GFLG +  ++  +     R+  +      +  DK+P+V+I   Y   N IA+   V 
Sbjct: 197 GDFGFLGEVYPDRVIYASTPVRRQYIP-----IRTDKMPEVEIFAMYGGANGIAVRNAVD 251

Query: 183 AGAQGIIHAGVGDGSLNNTVVPALTEARKKGVVIVRSSRVGQGIVA-----RNGEADDDQ 237
            G +GI+   +G G++N  ++ A+  A  K V +V ++RV  G V        G     +
Sbjct: 252 RGVKGIVVEALGMGNMNVAMLDAVKYAVAKKVPVVVTTRVHNGRVMPSYGFEGGGKTSFE 311

Query: 238 LDFVVSDTLNPQKARILLMLALTKTTDTK-EIQKMF 272
              V++D L   KARILLMLAL    + + ++Q  F
Sbjct: 312 AGAVMADDLKAAKARILLMLALQNGVNNQADLQATF 347


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 518,933
Number of extensions: 22161
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 195
Effective length of database: 736,747
Effective search space: 143665665
Effective search space used: 143665665
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)