BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3827.p (287 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 104 6e-24 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 90 1e-19 gi|134094120|ref|YP_001099195.1| putative transcriptional regula... 83 2e-17 gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 79 3e-16 gi|134094687|ref|YP_001099762.1| putative DNA-binding transcript... 78 6e-16 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 104 bits (259), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 96/296 (32%), Positives = 142/296 (47%), Gaps = 17/296 (5%) Query: 1 MELAELEIFRTVVAEGGITRAAERLNRVQSNVTTRIKQLEESIGVPLFVRERRRLVLTAA 60 +EL +L F TV E RAA RL+ Q ++ I+ LE +GV LF R R + LT A Sbjct: 3 IELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTPA 62 Query: 61 GEALLDYAERILD----LAQEARQVVAPHSPRGRLRIGSMESAAASRLPTPLAEFHQRWP 116 G ALL A+RIL L R+V + S GRL + + +A S LP L EF + +P Sbjct: 63 GSALLPEAQRILQQTAALPDLMRRVTSGAS--GRLSLAFVSTADYSVLPPFLREFRESYP 120 Query: 117 EVRLELSTGPTDVLMAGVRTGKLDAALVAGPVDDPA---FEATPLYKEELLLVTPRSHRR 173 V ++L TDV + + G++D L+ P+ D A + P+ E L+L P+ + Sbjct: 121 GVEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAAPKGLKA 180 Query: 174 VRAPGDVELDTLIVFEQGCAYRRRAEAW----FASHSRGGL-PLRTLELASYHAILACVA 228 ++ V L +L RR A A+ + + GL P E I+ V+ Sbjct: 181 LKGKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQTIIGLVS 240 Query: 229 AGAGVAVVPRSVLVMQVAPHGFATHSLGREGRVV-TYMISRRERGSASLLALRSLL 283 AG G+A+VP+SV ++ G L + +V T + RR+ S L A LL Sbjct: 241 AGMGIALVPQSVSNLKRP--GVDYKPLANKTPLVETGLAWRRDNASPVLKAFLELL 294 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 10/249 (4%) Query: 1 MELAELEIFRTVVAEGGITRAAERLNRVQSNVTTRIKQLEESIGVPLFVRERRRLVLTAA 60 M L EL+ V E AAE + Q ++ IK+LE+ +GV LF R + +T Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 60 Query: 61 GEALLDYAERILDLAQEARQVVAPHSPR--GRLRIGSMESAAASRLPTPLAEFHQRWPEV 118 G ++ AER+L+ +++ + G R+G + + A LP + +R P++ Sbjct: 61 GVQIVAQAERVLEQTAAIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQM 120 Query: 119 RLELSTGPTDVLMAGVRTGKLDAALVAGPVDDPAFEATPLYKEELLLVTPRSH----RRV 174 L L T L+ +R G++DAA+VA P+ D P+Y E ++ P+ H R Sbjct: 121 PLVLQENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQPVYDEPFVVAVPKHHPWAERSS 180 Query: 175 RAPGDVELDTLIVFEQGCAYRRRAEAWFASHSR----GGLPLRTLELASYHAILACVAAG 230 +++ +T+++ G +R + SR G RT E +S I VA+G Sbjct: 181 VTTDNLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTFEGSSLETIRHMVASG 240 Query: 231 AGVAVVPRS 239 G+ V+P++ Sbjct: 241 IGITVLPQA 249 >gi|134094120|ref|YP_001099195.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 284 Score = 82.8 bits (203), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 115/236 (48%), Gaps = 8/236 (3%) Query: 6 LEIFRTVVAEGGITRAAERLNRVQSNVTTRIKQLEESIGVPLFVRERRRLVLTAAGEALL 65 L F VV G TRAA+ ++ QS ++ +I++LE +G L R R + T GE LL Sbjct: 7 LRSFVAVVDTGSFTRAADSVHLTQSTISQQIRRLEMQVGCDLLNRSGRYVTTTLEGERLL 66 Query: 66 DYAERILDLAQEARQVVAPHSPRGRLRIGSMESAAASRLPTPLAEFHQRWPEVRLELSTG 125 YA RI L EA + +A + +G +R+G E L L+ F + VRLE+S+G Sbjct: 67 RYAHRIAQLMDEAMEQIAQSAGKGEVRLGVPEDFVGRALTPTLSAFIDTYSAVRLEVSSG 126 Query: 126 PTDVLMAGVRTGKLDAALVAGPVDDPAFEATPLYKEELLLVTPRSHRRVRAPGDVELDTL 185 + L + G+LD AL+ V A+ + E L V RS R A D L Sbjct: 127 MSHELWQRFQRGELDLALIKQRVGSMPGLAS--WSERLCWVESRS--RPNAMHDP--IPL 180 Query: 186 IVFEQGCAYRRRAEAWFASHSRGGLPLRTLELASYHAILACVAAGAGVAVVPRSVL 241 +VF G Y R+E A + G T AS ++ A V AG GV ++PR +L Sbjct: 181 VVFPIGGLY--RSEMMHALDAAGLRWRITYVSASLASVSAAVEAGLGVTLLPRRLL 234 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 78.6 bits (192), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 63/244 (25%), Positives = 113/244 (46%), Gaps = 10/244 (4%) Query: 1 MELAELEIFRTVVAEGGITRAAERLNRVQSNVTTRIKQLEESIGVPLFVRERRRLVLTAA 60 +L +L +F V G IT AER + ++ + RI+ +EE +G+PL +R +R + T Sbjct: 3 FDLTDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEATPV 62 Query: 61 GEALLDYAERILDLAQEARQVVAPHSP--RGRLRIGSMESAAASRLPTPLAEFHQRWPEV 118 G+AL+ +A L + R ++ ++ +G +RI S + LP L+ F P V Sbjct: 63 GKALVHHARIALRQQERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHPNV 122 Query: 119 RLELSTGPTDVLMAGVRTGKLDAALVAGPVDDPAFEATPLYKEELLLVTPRSH-----RR 173 ++L + +++ + G +D +++ VD FE P + + L LV R H Sbjct: 123 NIDLEERLSFEIVSALTEGTIDIGILSDSVDFSGFETFPFHDDRLTLVVARDHPLSVRSS 182 Query: 174 VRAPGDVELDTLIVFEQGCAYRRRAEAWFASHSRGGLPLRTLELASYHAILACVAAGAGV 233 + ++ D I ++G A + A R R + L S+ A+ + G+ Sbjct: 183 IHFAETLDYD-FIGLQEGSALQEYLSEQAAKMGR-RFKYR-VRLRSFDAVCRMIERNVGI 239 Query: 234 AVVP 237 VVP Sbjct: 240 GVVP 243 >gi|134094687|ref|YP_001099762.1| putative DNA-binding transcriptional regulatory transcription regulator protein [Herminiimonas arsenicoxydans] Length = 305 Score = 77.8 bits (190), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 68/245 (27%), Positives = 112/245 (45%), Gaps = 12/245 (4%) Query: 1 MELAELEIFRTVVAEGGITRAAERLNRVQSNVTTRIKQLEESIGVPLFVRERRRLVLTAA 60 +L L +F V G ITR A++ N + + RI LE +G L R + LT A Sbjct: 6 FDLITLSLFVDVARTGSITRGAQQANLALAAASKRISDLEAHLGTVLLYRHANGVTLTDA 65 Query: 61 GEALLDYAERILDLAQEARQVVAPHSP--RGRLRIGSMESAAASRLPTPLAEFHQRWPEV 118 G A +A I+ + V++ ++ RG++RI + SA LP L F Q V Sbjct: 66 GNACFQHALGIIQDVERMSGVMSDYASGIRGQVRIWANTSAITQFLPDDLHAFMQAHAGV 125 Query: 119 RLELSTGPTDVLMAGVRTGKLDAALVAGPVDDPAFEATPLYKEELLLVTPRS-----HRR 173 R+++ + ++AG+R + D + A P K++L LV P++ H++ Sbjct: 126 RIDIEERNSGDVVAGIRENRTDIGIFADPTPAEGIAVFTYRKQKLGLVVPKNHPLAAHKQ 185 Query: 174 VRAPGDVELDTLIVFEQGCAYRRRAEAWFASHSRGGLPLRT-LELASYHAILACVAAGAG 232 V ++ D + + E R A+ SR PL+ ++ S+ A+ V AG G Sbjct: 186 VSLSDALDYDFVSLAEATSLTER----LHAACSRLQKPLKLRAQVRSFDAVCRMVKAGVG 241 Query: 233 VAVVP 237 + VVP Sbjct: 242 IGVVP 246 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 468,140 Number of extensions: 18476 Number of successful extensions: 91 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 84 Number of HSP's successfully gapped: 17 Length of query: 287 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 206 Effective length of database: 733,452 Effective search space: 151091112 Effective search space used: 151091112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)