BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3826.p (314 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095677|ref|YP_001100752.1| LysR family transcriptional reg... 457 e-130 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 61 6e-11 gi|134093619|ref|YP_001098694.1| putative transcriptional regula... 60 1e-10 gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herm... 60 2e-10 >gi|134095677|ref|YP_001100752.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 296 Score = 457 bits (1176), Expect = e-130, Method: Compositional matrix adjust. Identities = 215/295 (72%), Positives = 253/295 (85%) Query: 4 LNYKHLHYFWTVAKTGGVARASERLHLTAQTISGQISLFEESLGYKLFKRVGRRLELNDE 63 +NYKHLHYFW VAK GG+ RASERLHLT QTISGQI+LFE+ LGYKLF R+GRRLELND Sbjct: 1 MNYKHLHYFWVVAKAGGIGRASERLHLTPQTISGQITLFEDVLGYKLFNRIGRRLELNDA 60 Query: 64 GRMVFDYAERIFSLGQELEEALRLRPGGRALQLRVGVADAVPKAIAYLLLESALAMQEPI 123 GR+V YA+ IF+LG+EL+E LR RPGG LQ RVGVADAVPKAIAYLLLE A+ + E + Sbjct: 61 GRVVLGYADEIFTLGEELQEVLRFRPGGWPLQFRVGVADAVPKAIAYLLLEPAMELPESL 120 Query: 124 RIICREGKLDVLLADLAIHKLDIIIADSPMPPNVDVRGYHHLLGECDTSFFATPALARRY 183 R++CREGKL LLADLA+H+LDI+IADSPMP N+DVRGY+HLLGEC +FFAT LA+ Y Sbjct: 121 RLVCREGKLTNLLADLAVHRLDIVIADSPMPANIDVRGYNHLLGECGVTFFATDELAKEY 180 Query: 184 RKGFPLSLDGAPFLMPGEDAAVRPRLLRWFEKQGIRPQITGEFDDGALLLAFGDAGAGIF 243 +GFP SLDGAPFLMPGEDAAVRPRL+RWFEK+ +RP+I GEFDDGALL AFG AG GIF Sbjct: 181 EEGFPKSLDGAPFLMPGEDAAVRPRLIRWFEKEKVRPRIIGEFDDGALLQAFGGAGKGIF 240 Query: 244 AAPTAIAAQIRKQYGLVDIGKTDAIREQFYAISVERRLSHPAVLAIQSAARGNLV 298 AAP+A+A QI KQYG+ +IG+T + EQFYAISVER+L+HPAV+AI SAAR +L+ Sbjct: 241 AAPSAVADQIIKQYGVTEIGRTSLVTEQFYAISVERQLTHPAVVAISSAARESLI 295 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 61.2 bits (147), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 65/254 (25%), Positives = 106/254 (41%), Gaps = 8/254 (3%) Query: 3 SLNYKHLHYFWTVAKTGGVARASERLHLTAQTISGQISLFEESLGYKLFKRVGRRLELND 62 ++ + L YF TVA+ RA+ RLH+T +S I E LG +LF+R R + L Sbjct: 2 NIELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALTP 61 Query: 63 EGRMVFDYAERIFSLGQELEEALRLRPGGRALQLRVGVADAVPKAIAYLLLESALAMQEP 122 G + A+RI L + +R G + +L + ++ L Sbjct: 62 AGSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYPG 121 Query: 123 IRIICREGKLDVLLADLAIHKLDIIIADSPMPPNVDVR-GYHHLLGECDTSFFATPA--L 179 + I RE DV L DL ++D+ + P+P ++ Y +L E A P Sbjct: 122 VEIDLREATTDVQLDDLMQGRIDVGLLIPPLPDKAKLQLDYLPVLSE--PLILAAPKGLK 179 Query: 180 ARRYRKGFPL-SLDGAPFLM-PGEDA-AVRPRLLRWFEKQGIRPQITGEFDDGALLLAFG 236 A + ++ L SL P ++ P A A +L + G+ P I E ++ Sbjct: 180 ALKGKQSVALQSLAELPLIIFPRRIAPAFHDAILSCYRDAGLTPHIGQEAIQMQTIIGLV 239 Query: 237 DAGAGIFAAPTAIA 250 AG GI P +++ Sbjct: 240 SAGMGIALVPQSVS 253 >gi|134093619|ref|YP_001098694.1| putative transcriptional regulator [Herminiimonas arsenicoxydans] Length = 367 Score = 60.5 bits (145), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 6/141 (4%) Query: 7 KHLHYFWTVAKTGGVARASERLHLTAQTISGQISLFEESLGYKLFKRVGRRLELNDEGRM 66 + L F TVA+ +RA+E LHLT +S Q+ E+ G LF+++G+++ L G Sbjct: 51 RQLKVFETVARLLSFSRAAEELHLTQPAVSTQVKKLEDHAGLALFEQLGKKIYLTPGGTE 110 Query: 67 VFDYAERIFSLGQELEEALRLRPGGRALQLRVGVADAVPKAIAYLLLESALAMQE---PI 123 + Y+ I QE E+A+ G +L V V A LL+E A + Q + Sbjct: 111 LLHYSRTIIQQFQEAEDAMTQFKGITGGKLNVAVISAGDYFFPRLLVEFARSHQGVTLNL 170 Query: 124 RIICREGKLDVL---LADLAI 141 + REG L+ L L DLAI Sbjct: 171 SVHNREGLLNQLANNLTDLAI 191 >gi|134094924|ref|YP_001099999.1| transcriptional regulator [Herminiimonas arsenicoxydans] Length = 293 Score = 59.7 bits (143), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/148 (32%), Positives = 68/148 (45%), Gaps = 9/148 (6%) Query: 4 LNYKHLHYFWTVAKTGGVARASERLHLTAQTISGQISLFEESLGYKLFKRVGRRLELNDE 63 +N L F V +G + A++ L T +S +S EE L L R RR+EL DE Sbjct: 3 INSDDLKTFVAVIDSGTLGAAAQHLGQTTSAVSRGLSRLEEKLATSLLTRTTRRMELTDE 62 Query: 64 GRMVFDYAERIFSLGQELEEALRLR---PGGRALQLRVGVADAVPKAIAYLLLESALAMQ 120 GR+ A I + E EEA+R+R P GR LR+ DA I + ++ + Sbjct: 63 GRLFLKKARAILAAMDEAEEAIRVRRQQPSGR---LRI---DAAAPFILHAIVPHVAEFR 116 Query: 121 EPIRIICREGKLDVLLADLAIHKLDIII 148 I E + +ADL H+ DI I Sbjct: 117 ALYPQITLELTSNDQVADLLEHRTDIAI 144 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 556,410 Number of extensions: 21623 Number of successful extensions: 66 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 67 Number of HSP's successfully gapped: 4 Length of query: 314 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 232 Effective length of database: 730,157 Effective search space: 169396424 Effective search space used: 169396424 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)