BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3825.p
         (97 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095678|ref|YP_001100753.1| hypothetical protein HEAR2506 [...    82   7e-18

>gi|134095678|ref|YP_001100753.1| hypothetical protein HEAR2506
          [Herminiimonas arsenicoxydans]
          Length = 84

 Score = 81.6 bits (200), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 54/88 (61%), Gaps = 6/88 (6%)

Query: 10 NLLISERQGIEIDYCPQCRGVWLDRGELDKLIERAMVSQAAPTSAPMPAARVPGPPPAAY 69
          +L++S+R  IEIDYCPQCRGVWLDRGELDKLIER+    A   +   PA R       A 
Sbjct: 2  HLIMSDRHAIEIDYCPQCRGVWLDRGELDKLIERS----ANAVTEAAPAIRHRSERKNAR 57

Query: 70 DAR-FGHGGYGYEHKRKKKGFLGEIFDF 96
            +  G+   GY  K  KK  +GE+FDF
Sbjct: 58 QEKLLGYKKEGYGQK-NKKDLIGELFDF 84


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.141    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 163,401
Number of extensions: 4095
Number of successful extensions: 16
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 97
Length of database: 1,000,347
Length adjustment: 65
Effective length of query: 32
Effective length of database: 786,172
Effective search space: 25157504
Effective search space used: 25157504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 121 (51.2 bits)