BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3822.p (1558 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096237|ref|YP_001101312.1| glutamate synthase, large subun... 2841 0.0 gi|134093603|ref|YP_001098678.1| putative glutamate synthase (NA... 145 1e-35 >gi|134096237|ref|YP_001101312.1| glutamate synthase, large subunit [Herminiimonas arsenicoxydans] Length = 1562 Score = 2841 bits (7364), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1364/1561 (87%), Positives = 1456/1561 (93%), Gaps = 4/1561 (0%) Query: 1 MHAQGLYDPANEHDACGVGFIAHIKGKKSHSIVDQGLLILKNLDHRGAVGADALMGDGAG 60 M AQGLYDPANEHDACGVGF+AHIKGKKSHSIV+QGLLILKN+DHRGAVGAD LMGDGAG Sbjct: 1 MRAQGLYDPANEHDACGVGFVAHIKGKKSHSIVEQGLLILKNIDHRGAVGADKLMGDGAG 60 Query: 61 ILIQIPDQYYREEMAKQGVDLPPPGEYGVGMIFLPKENASRIACEQEIERSVLAEGQIVL 120 ILIQIPDQYYREEMAKQG++LPP GEYGVGM+FLPKE+ASRIACEQE+ERSVLAEGQ+VL Sbjct: 61 ILIQIPDQYYREEMAKQGINLPPAGEYGVGMVFLPKEHASRIACEQELERSVLAEGQVVL 120 Query: 121 GWRDVPVDRDMPMSPTVREKEPVIRQIFIGRGPDVMVTDALERKLYVIRKSSGHAIQALN 180 GWRDV VD+DMPMSPTVREKEPVIRQIFIGRG D+MVTDALERKLYVIRKSSGHAIQAL+ Sbjct: 121 GWRDVLVDKDMPMSPTVREKEPVIRQIFIGRGQDIMVTDALERKLYVIRKSSGHAIQALH 180 Query: 181 LLHGKEFFVPSMSARTVVYKGLLLADQVGVYYKDLQDERCVSALALVHQRFSTNTFPEWP 240 LLHG+EFFVPSMSARTVVYKGLLLADQVG YYKDLQD RCVSALALVHQRFSTNTFPEWP Sbjct: 181 LLHGQEFFVPSMSARTVVYKGLLLADQVGEYYKDLQDPRCVSALALVHQRFSTNTFPEWP 240 Query: 241 LAHPYRLIAHNGEINTVKGNFNWMRAREGVMQSAVLGADLKKLFPLIYEGQSDTASFDNA 300 LAHPYRLIAHNGEINTVKGNFNWMRAREGVM+SAVLG DLKKLFPLIYEGQSDTA FDNA Sbjct: 241 LAHPYRLIAHNGEINTVKGNFNWMRAREGVMKSAVLGDDLKKLFPLIYEGQSDTACFDNA 300 Query: 301 LELLVMAGYPLPQAMMMMVPEAWENHTSMDDNRRAFYEYHAAMMEPWDGPAALAFTDGRH 360 LELLVMAGYP+ QAMMMM+PEAWENHT MD NRRAFYEYHAAMMEPWDGPAA+AFTDGRH Sbjct: 301 LELLVMAGYPIAQAMMMMIPEAWENHTLMDANRRAFYEYHAAMMEPWDGPAAMAFTDGRH 360 Query: 361 IGGTLDRNGLRPARYIVTDDDLVVMASESGVLPIPESKIIQKWRLQPGKMFLIDLDAGRI 420 IGGTLDRNGLRPARYIVTDDDLVVMASESGVLPIPESKIIQKWRLQPGKMFLIDLDAGRI Sbjct: 361 IGGTLDRNGLRPARYIVTDDDLVVMASESGVLPIPESKIIQKWRLQPGKMFLIDLDAGRI 420 Query: 421 IDDKELKDTYANAKPYKQWINSVRVKLDELKEEPRQPSSPLKLLDLQQVFGYTQEDVKFL 480 IDDKELKDTYANAKPYKQWI SVR+KL+ELK EP + LLDLQQ FGYTQED+KFL Sbjct: 421 IDDKELKDTYANAKPYKQWIQSVRIKLNELKPEPAEAKPTTALLDLQQAFGYTQEDLKFL 480 Query: 481 MAPMASGGEEAIGSMGNDSPLAVMSNKNKPLYNYFRQLFAQVTNPPIDPIREALVMSLVS 540 M+PMA EEA GSMGNDSPLAVMSNK+K LYNYFRQLFAQVTNPPIDPIREA+VMSLVS Sbjct: 481 MSPMAITAEEATGSMGNDSPLAVMSNKDKTLYNYFRQLFAQVTNPPIDPIREAMVMSLVS 540 Query: 541 FIGPKPNLLDTNNINPPMRLEVSQPVLDYDDIAKLRNISAHSGGKFKSYELNICYPVAWG 600 FIGPKPNLLDTNNINPPMRLEVSQPVLDY DIA+LRNISAH+GGKFKS+ELNICYPVAWG Sbjct: 541 FIGPKPNLLDTNNINPPMRLEVSQPVLDYADIARLRNISAHTGGKFKSHELNICYPVAWG 600 Query: 601 KEGIEARLASLCAKAVDAVKSGHNILIISDRKVDADQLPIPALLATSAIHQHLVSKGLRT 660 K+GIEARLASLCA+AVDAV SGHNILIISDR++D +Q+ IPALLATSAIH HLVSKGLRT Sbjct: 601 KDGIEARLASLCAQAVDAVASGHNILIISDRRIDENQVAIPALLATSAIHLHLVSKGLRT 660 Query: 661 STGLVVETGSARETHHFALLAGYGAEAIHPYLAMDTLADLAKGLPGDLSPEKAIYNFQKA 720 STGLVVETGSARETHHFALLAGYGAEAIHPYLAMDTL+ +AK L GDLSPEKAI NFQKA Sbjct: 661 STGLVVETGSARETHHFALLAGYGAEAIHPYLAMDTLSHMAKDLSGDLSPEKAIANFQKA 720 Query: 721 VGKGLLKVMSKMGISTYMSYCGAQIFEAIGLSKALVDKYFKGTASNVEGIGVFEVAEEAL 780 VGKGL+KVMSKMGISTYMSYCGAQIFEAIGL+K+L++KYFKGT+SNVEGIGVFEVAEEAL Sbjct: 721 VGKGLMKVMSKMGISTYMSYCGAQIFEAIGLNKSLIEKYFKGTSSNVEGIGVFEVAEEAL 780 Query: 781 RLHTAAFSADPVLANALDAGGEYAFRIRGEEHMWTPDAIAKLQHSTRSNSYNTYKEYAQI 840 RLH AAFSADPVLA+ALDAGGEYA+R+RGEEHMWTPDAIAKLQHSTR+N+++TYKEYAQI Sbjct: 781 RLHKAAFSADPVLAHALDAGGEYAYRVRGEEHMWTPDAIAKLQHSTRANNFSTYKEYAQI 840 Query: 841 INDQSKRHMTLRGLFEFKIDPSKAISIDEVEPAKEIVKRFATGAMSLGSISTEAHATLAI 900 INDQSKRHMTLRGLFEFK+DP+ AI +DEVEPAKEIVKRFATGAMSLGSISTEAHATLAI Sbjct: 841 INDQSKRHMTLRGLFEFKLDPASAIPLDEVEPAKEIVKRFATGAMSLGSISTEAHATLAI 900 Query: 901 AMNRIGGKSNTGEGGEDVNRYRNELKGIPIKQGATLASEIGREHIEVDIPLLEGDSLRSR 960 AMNRIGGKSNTGEGGED RYRNEL+GIPIK G+TLAS IG + +EVD PLL GDSLRS+ Sbjct: 901 AMNRIGGKSNTGEGGEDTKRYRNELRGIPIKDGSTLASVIGHDVVEVDTPLLPGDSLRSK 960 Query: 961 IKQVASGRFGVSAEYLISADQIQIKMAQGAKPGEGGQLPGHKVSEYIAKLRVSVPGVGLI 1020 IKQVASGRFGV+ EYL SA+QIQIKMAQGAKPGEGGQLPGHKVSEYIA LR SVPGVGLI Sbjct: 961 IKQVASGRFGVTTEYLTSAEQIQIKMAQGAKPGEGGQLPGHKVSEYIAHLRFSVPGVGLI 1020 Query: 1021 SPPPHHDIYSIEDLAQLIHDLKNVNPRASISVKLVSEVGVGTVAAGVAKAKSDHVVIAGH 1080 SPPPHHDIYSIEDLAQLIHDLKNVNP ASISVKLV+EVGVGTVA GVAKAK+DHVVIAGH Sbjct: 1021 SPPPHHDIYSIEDLAQLIHDLKNVNPAASISVKLVAEVGVGTVATGVAKAKADHVVIAGH 1080 Query: 1081 DGGTGASPLSSIKHAGSPWELGLAETQQTLVLNGLRNRIRVQADGQMKTGRDVVIGAMLG 1140 DGGTGASPLSS+K+AGSPWELGLAETQQTL+LNGLR RIRVQADGQMKTGRDVVI A+LG Sbjct: 1081 DGGTGASPLSSVKYAGSPWELGLAETQQTLILNGLRTRIRVQADGQMKTGRDVVIAALLG 1140 Query: 1141 ADEFGFATAPLVVEGCIMMRKCHLNTCPVGVATQDPVLRAKFSGKPEHVVNFFFFIAEEA 1200 ADE GF+TAPLVVEGCIMMRKCHLNTCPVGVATQDPVLRAKFSGKPEHVVN+FFFIAEEA Sbjct: 1141 ADEMGFSTAPLVVEGCIMMRKCHLNTCPVGVATQDPVLRAKFSGKPEHVVNYFFFIAEEA 1200 Query: 1201 RQIMAQLGIRKFDDLIGRADLLDRSKAIAHWKAKGLDFSRIFHQPESKLPV--YHTDVQD 1258 RQIMAQLGIR FD+LIGRADLLD+SKAI HWKAKGLDFSR+F+QP V Y T+ QD Sbjct: 1201 RQIMAQLGIRTFDELIGRADLLDKSKAITHWKAKGLDFSRMFYQPAVAEGVARYQTEEQD 1260 Query: 1259 HGLDKALDHKLIAQAKIALEKGEKVSFISPIKNLNRTVGAMLSGEVAKRYGDEGLPDDTI 1318 H L+KALD+KLI QAK A+E GEKVSFISPIKN+NRTVGAMLSGEVAK+YG EGLPDDTI Sbjct: 1261 HALEKALDNKLIVQAKAAIEHGEKVSFISPIKNVNRTVGAMLSGEVAKKYGHEGLPDDTI 1320 Query: 1319 HIQLQGTAGQSAGAFLAKGVTLDLVGEGNDYVGKGLSGGRIIVRPNTEFRGRAVDNMISG 1378 HIQLQGTAGQSAGAFLA G+TLDLVGEGNDYVGKGLSGGRIIVRPNTEFRGRAV+N+I+G Sbjct: 1321 HIQLQGTAGQSAGAFLAHGITLDLVGEGNDYVGKGLSGGRIIVRPNTEFRGRAVENIIAG 1380 Query: 1379 NTVLYGAISGEAFINGVAGERFAVRNSGAIAVVEGTGDHGCEYMTGGTVVVLGNTGRNFA 1438 NT+LYGA++GEAF NGVAGERFAVRNSGAIAVVEGTGDHGCEYMTGGTVVVLG TGRNFA Sbjct: 1381 NTLLYGAVAGEAFFNGVAGERFAVRNSGAIAVVEGTGDHGCEYMTGGTVVVLGETGRNFA 1440 Query: 1439 AGMSGGIAYVYDPEGDFAGKCNTAMVSLEKVLSDTEQEQTLGRNIWHSLLRGGERQTDEA 1498 AGMSGGIAYVYDP+G+FAGKCN AMVSLE V + EQE WHS RG E QTDEA Sbjct: 1441 AGMSGGIAYVYDPKGEFAGKCNMAMVSLEHVQTTAEQESKAEHGTWHSHKRGTEAQTDEA 1500 Query: 1499 ILRGLIERHFKYTGSTRARYLLDNWAASRAKFVKVFPTEYKRALAELAA--AAETKKEKV 1556 IL+ LIERHFKYTGSTRAR LLD W +R+KFVKVFP+EYKRAL E+ A A + KV Sbjct: 1501 ILKNLIERHFKYTGSTRARALLDEWNTARSKFVKVFPSEYKRALTEMHANQAEQAVSTKV 1560 Query: 1557 A 1557 A Sbjct: 1561 A 1561 >gi|134093603|ref|YP_001098678.1| putative glutamate synthase (NADPH) [Herminiimonas arsenicoxydans] Length = 542 Score = 145 bits (366), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 113/345 (32%), Positives = 159/345 (46%), Gaps = 27/345 (7%) Query: 880 FATGAMSLGSISTEAHATLAIAMNRIGGKSNTGEGGEDVNRYRNELKGIPIKQGATLASE 939 F AMS G++S A L + G +TGEG ++RY + G L E Sbjct: 157 FNISAMSFGALSANAIRALNQGAQKGGFMHDTGEG--SISRYHQPENAV--DTGGDLMWE 212 Query: 940 IGREHIEVDIPLLEGDSLRSRIKQVASGRFGVSAEYLISADQIQIKMAQGAKPGEGGQLP 999 IG + RS ++ +F V+A L I++K++QGAKPG GG LP Sbjct: 213 IGSGYF----------GCRSEDGSFSAEKFAVNAN-LPQVKMIEVKLSQGAKPGHGGMLP 261 Query: 1000 GHKVSEYIAKLRVSVPGVGLISPPPHHDIYSIEDLAQLIHDLKNVNPRASISVKLVSEVG 1059 G KVS IA R GV ISP H + L Q I L+N++ KL +G Sbjct: 262 GAKVSIEIATARDIPEGVDCISPSSHSAFDTPTGLLQFIEQLRNLSGGKPTGFKLA--IG 319 Query: 1060 VGTVAAGVAKA------KSDHVVIAGHDGGTGASPLSSIKHAGSPWELGLAETQQTLVLN 1113 G+ KA D +VI G +GGTGA+P+ H G P + L TLV Sbjct: 320 HPWEFFGIVKAMLHTGITPDFIVIDGGEGGTGAAPVEFTDHVGVPLQEALLLAHNTLVGT 379 Query: 1114 GLRNRIRVQADGQMKTGRDVVIGAMLGADEFGFATAPLVVEGCIMMRKCHLNTCPVGVAT 1173 LR+++++ A G++ T D+V LGAD A + GCI + CH + CP G+AT Sbjct: 380 KLRDKVKIGASGKIITAFDIVRTIALGADWCNSARGFMFALGCIQSQSCHTDRCPTGIAT 439 Query: 1174 QDPVLRAK---FSGKPEHVVNFFFFIAEEARQIMAQLGIRKFDDL 1215 QD LR + K E V NF + +++A G+ +L Sbjct: 440 QD-ALRQRALVVPDKAERVANFHKNTLKALAELIAAAGLHHPSEL 483 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 2,991,250 Number of extensions: 130709 Number of successful extensions: 362 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 358 Number of HSP's successfully gapped: 2 Length of query: 1558 Length of database: 1,000,347 Length adjustment: 94 Effective length of query: 1464 Effective length of database: 690,617 Effective search space: 1011063288 Effective search space used: 1011063288 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)