BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3821.p
         (487 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096236|ref|YP_001101311.1| glutamate synthase, small subun...   891   0.0  

>gi|134096236|ref|YP_001101311.1| glutamate synthase, small subunit,
           nucleotide-binding, 4Fe-4S protein [Herminiimonas
           arsenicoxydans]
          Length = 487

 Score =  891 bits (2302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/487 (84%), Positives = 457/487 (93%)

Query: 1   MGKATGFMEYQRLKEASEAPAARTKHYKEFVLHLSDADAKIQGARCMDCGIPFCNNGCPV 60
           MGK TGFME+QRL+EASE P  RTKHYKEF +HLSDA+AK+Q  RCMDCGIPFCNNGCPV
Sbjct: 1   MGKITGFMEFQRLQEASEEPKKRTKHYKEFTVHLSDAEAKVQATRCMDCGIPFCNNGCPV 60

Query: 61  NNIIPDWNDLVYRGNYKEALDTLHQTNNFPEFTGRICPAPCEAACTLGINNDAVGIKSIE 120
           NNIIPDWNDLVY G YK+ALDTLH TNNFPEFTGRICPAPCE+ACTLGIN+D VGIKSIE
Sbjct: 61  NNIIPDWNDLVYSGAYKQALDTLHSTNNFPEFTGRICPAPCESACTLGINSDPVGIKSIE 120

Query: 121 HFIIDKGWENGWVVPQPAAVKTGKKVAVVGSGPAGLAAAQQLARAGHDVTVFEKNDRVGG 180
           HFIIDKGWE+GWVVPQP ++KTGKKVA+VGSGPAG+AAAQQLAR GHDVT+FEKNDR+GG
Sbjct: 121 HFIIDKGWESGWVVPQPPSIKTGKKVAIVGSGPAGMAAAQQLARVGHDVTLFEKNDRIGG 180

Query: 181 LLRYGIPDFKMEKSHIDLRVEQMKAEGVTFRTGVFVGKDFPETVNNWSKESVTPEELKKE 240
           LLRYGIPDFKMEKSHIDLRV+QM+AEGVTFRTGV VGKDFP  + NW+KE+++PE+L K+
Sbjct: 181 LLRYGIPDFKMEKSHIDLRVKQMEAEGVTFRTGVLVGKDFPANIINWAKETISPEQLDKD 240

Query: 241 FDAVVIAGGAESPRDLPVPGRELKGVHFAMDFLPLQNKVNAGDKLKNQIMATGKNVVVIG 300
           FDAV++ GGAE PRDLPVPGREL+GVHFAMDFLPLQNKVNAGDK+K+QI+ATGK+V+VIG
Sbjct: 241 FDAVILTGGAEQPRDLPVPGRELRGVHFAMDFLPLQNKVNAGDKVKDQILATGKHVIVIG 300

Query: 301 GGDTGSDCVGTSNRHGAASVTQFELMPQPPESENKPLVWPYWPIKLRTSSSHEEGCQRDF 360
           GGDTGSDCVGTSNRHGAAS+ QFEL+PQPPE+ENKP+VWPYWP KLRTSSSHEEGC+RD+
Sbjct: 301 GGDTGSDCVGTSNRHGAASIVQFELLPQPPETENKPMVWPYWPTKLRTSSSHEEGCERDW 360

Query: 361 AVTTKRLEGKGGKVEKLIAARVEFKDGKMVEVPDSEFEIKADLVLLAMGFVSPVQQVLDA 420
           AV TKRLEGK GKVEKLIAARVE+KDG+M EVPDSEFE+KADLVLLAMGFVSPV QVLDA
Sbjct: 361 AVATKRLEGKNGKVEKLIAARVEWKDGRMQEVPDSEFEMKADLVLLAMGFVSPVAQVLDA 420

Query: 421 FGVEKDARGNAKATTDGEGCYKTSVEKVFAAGDMRRGQSLVVWAIREGRQCARAVDEFLM 480
           F ++KDARGNAKATTDG+GCY+TSV+KVFAAGDMRRGQSLVVWAIREGRQCAR VD FLM
Sbjct: 421 FSIDKDARGNAKATTDGDGCYRTSVDKVFAAGDMRRGQSLVVWAIREGRQCAREVDAFLM 480

Query: 481 GSSLLPR 487
           G S+LPR
Sbjct: 481 GESVLPR 487


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 921,571
Number of extensions: 37930
Number of successful extensions: 110
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 1,000,347
Length adjustment: 85
Effective length of query: 402
Effective length of database: 720,272
Effective search space: 289549344
Effective search space used: 289549344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)