BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3818.p
         (316 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096053|ref|YP_001101128.1| ribose-phosphate pyrophosphokin...   595   e-171

>gi|134096053|ref|YP_001101128.1| ribose-phosphate pyrophosphokinase
           [Herminiimonas arsenicoxydans]
          Length = 316

 Score =  595 bits (1533), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 291/316 (92%), Positives = 305/316 (96%)

Query: 1   MALENLMVFTGNANPELARGVAEKLGIPLGKANVSKFSDGEVMVEINENVRGKDVFVLQS 60
           MALENLMVFTGNANP+LA GVA+ LGIPLGKA VSKFSDGE++VEINENVRGKDVFVLQS
Sbjct: 1   MALENLMVFTGNANPDLALGVAKHLGIPLGKAVVSKFSDGEIVVEINENVRGKDVFVLQS 60

Query: 61  TCAPTNDNLMEIMIMVDALKRASAGRITAAIPYYGYARQDRRPRSARVAISAKVVANMLQ 120
           TCAPTNDNLMEIM+MVDALKRASAGRITAAIPYYGYARQDRRPRSARVAISAKVVANMLQ
Sbjct: 61  TCAPTNDNLMEIMLMVDALKRASAGRITAAIPYYGYARQDRRPRSARVAISAKVVANMLQ 120

Query: 121 EAGVERVLIMDLHADQIQGFFDIPVDNIYASPILLGDLVNKNYEDLLVVSPDVGGVVRAR 180
           EAGVERVLIMDLHADQIQGFFDIPVDNIYASPILL DLV KNY+DLLVVSPDVGGVVRAR
Sbjct: 121 EAGVERVLIMDLHADQIQGFFDIPVDNIYASPILLSDLVAKNYDDLLVVSPDVGGVVRAR 180

Query: 181 ALAKRLNCDLAIIDKRRPKANVSEVMNIIGEVEGRNCVIMDDMVDTAGTLTKAAEVLKER 240
           ALAKR+NCDLAIIDKRRPKANVSEVMNIIGEVEGRNCVIMDDMVDTAGTLTKAAEVLKER
Sbjct: 181 ALAKRMNCDLAIIDKRRPKANVSEVMNIIGEVEGRNCVIMDDMVDTAGTLTKAAEVLKER 240

Query: 241 GAKKVVAYCTHPVLSGPAIDRIANSPLDELVVTDTIPLSPAARGCPKVRQLTCADLLAET 300
           GAKKVVAYCTHPVLSGPAI+RI NSPLDELVVTDTIPL+ AA+ CPK+R L+CA LLAET
Sbjct: 241 GAKKVVAYCTHPVLSGPAIERITNSPLDELVVTDTIPLTDAAKACPKIRVLSCASLLAET 300

Query: 301 FKRITKGDSVMSLFAE 316
           FKRI+ GDSVMS+FAE
Sbjct: 301 FKRISTGDSVMSMFAE 316


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 556,984
Number of extensions: 21862
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 234
Effective length of database: 730,157
Effective search space: 170856738
Effective search space used: 170856738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)