BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3817.p
         (289 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096052|ref|YP_001101127.1| 4-diphosphocytidyl-2-C-methyl-D...   367   e-103

>gi|134096052|ref|YP_001101127.1|
           4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
           [Herminiimonas arsenicoxydans]
          Length = 286

 Score =  367 bits (942), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 188/288 (65%), Positives = 225/288 (78%), Gaps = 6/288 (2%)

Query: 1   MSTTLTACPAPAKLNLFLHVTGRRPDGYHLLQSAFQLIDRCDTLDFSLREDGRIVRTNEV 60
           M  TL  CPAPAKLNLFLHVTGRR DGYHLLQS FQLIDR D L FS+R+DG I R+ E+
Sbjct: 1   MVRTLNNCPAPAKLNLFLHVTGRRADGYHLLQSVFQLIDRGDVLHFSVRDDGLIHRSTEL 60

Query: 61  PGVPAESDLVIRAAHLLR-QASGQPHL-GADITVHKVLPMGGGVGGGSSDAATTLMVLNH 118
            GVPA+SDLV+RAA LL+ +A  Q    GADI + K LPMGGG+GGGSSDAATTL+ LNH
Sbjct: 61  AGVPADSDLVVRAARLLQTEAKKQGKTPGADIAIEKKLPMGGGLGGGSSDAATTLLALNH 120

Query: 119 LWKCGYNRASLMKMGLQLGADVPFFLFGRNAFAEGVGEELSALRTADCWYVVIEPGVSVP 178
           LW+ G  RA LM +GLQLGADVPFFLFG+NAFAEG+GE L A++T + W++VIEPGVSVP
Sbjct: 121 LWQTGLTRAELMALGLQLGADVPFFLFGQNAFAEGIGEALMAVKTPESWFLVIEPGVSVP 180

Query: 179 TSIIFSSKLLTRDTKPVRITDFPDATKQVASSFGKNDLEMVATAHFPEVAAAVEWLGKFG 238
           T  IFSS  LTRDTKPV+I+DF  A +    SFGKNDL++VA   FP +A A++WL +FG
Sbjct: 181 TQQIFSSLELTRDTKPVKISDFSRAQE----SFGKNDLQVVAANLFPPIADAIKWLQQFG 236

Query: 239 NARMTGSGACVFCAFEHEHEADEVIKQLPSRWIGWKAKAMQEHPLAHL 286
           +ARMTGSGACVFC F+ E + D V+  +P +W  WKAKA+  HPLA+L
Sbjct: 237 DARMTGSGACVFCPFKEEQQVDAVLATVPQQWKAWKAKAITHHPLAYL 284


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 540,431
Number of extensions: 20660
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 208
Effective length of database: 733,452
Effective search space: 152558016
Effective search space used: 152558016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)