BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3815.p
         (600 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096050|ref|YP_001101125.1| TPR repeat-containing protein [...   601   e-173

>gi|134096050|ref|YP_001101125.1| TPR repeat-containing protein
           [Herminiimonas arsenicoxydans]
          Length = 602

 Score =  601 bits (1549), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 314/608 (51%), Positives = 446/608 (73%), Gaps = 14/608 (2%)

Query: 1   LKKTIALLTSSLLLTACSSFQ-QPGDKANAQ------AAQDQKT-AAAKAGNRKKAPKAK 52
           +K  + ++T S+L +  +  + +P   A A       A + QK  AA++  N+K+A + K
Sbjct: 1   MKNALVIVTLSVLFSTGADLRAEPLVPAYAAQPPQFIAKEGQKPPAASQPVNKKQASEDK 60

Query: 53  VQPQEDALPAVELTEDILYKVLTAEIAFQRGQWQSAYVTMLSAAQQTRDPRLAKRAAEMA 112
               +D LP+V+LTED+L+K+L AE+A+QRG WQ AYVTML +AQ+TRDPRLA+RAAE+A
Sbjct: 61  T---DDPLPSVDLTEDLLFKLLRAELAYQRGDWQLAYVTMLVSAQETRDPRLARRAAEIA 117

Query: 113 VAARQAGEALVAVRLWTELAPHSDEALQNYLGLIMLSDSVDEIEPLLTQRLADAAPQARG 172
           ++ +Q GEAL AVRLW ELAPHSDEA Q YLGL++L +++ E +P+ T+RL +  PQARG
Sbjct: 118 LSVKQTGEALSAVRLWRELAPHSDEANQFYLGLVVLGENLAEAKPIFTERLQEVRPQARG 177

Query: 173 PMIMQVQRLLARAKDKKASYTILQNITKPYGDLLETHLALAQGAFGLGDAATAQREAATA 232
            +I+Q+QRLL R KDK A++T+L+ +T PY +L+ETH+AL+QGAF   D A ++ E+  A
Sbjct: 178 LLILQIQRLLVRTKDKNAAFTLLEELTAPYQNLVETHIALSQGAFAKNDLARSRMESKKA 237

Query: 233 LKIKPDSELAVLTAAQVAFTNADATKLVTDFLRKYPDSREVRVAYARSLVEQKDYKQART 292
           L+IKPD E+AVL  AQ    + DA + +T FL K P SR+VR+AYA++L++ K  +QAR 
Sbjct: 238 LEIKPDLEIAVLMLAQATPNSVDALRTLTAFLDKNPKSRDVRIAYAKTLIDDKQLEQARK 297

Query: 293 QFETLLKEDGEDATTLFALGVLSAQTDQLKDAEYYLQRYLQVLSAQPEDDRDPSQALLLL 352
           QFE LLK+  +D T L+A G+L+AQ +  + AE YL  YLQ L   P+++RDP QALL+L
Sbjct: 298 QFEILLKDQPDDLTILYATGILAAQMNDREGAEKYLTTYLQKLEDNPDEERDPVQALLIL 357

Query: 353 SRIAEERRDLDSALRYLDQAEPGSEGYVNIQVRRAQLLARKNDIDAARKALEDAQADSNN 412
           S+I+E+R+D  +AL++L Q EPG   Y++ Q+R AQ++A   D++ AR  L   + +   
Sbjct: 358 SQISEDRKDFPAALKWLAQVEPGP-AYLDAQIRSAQIMASAGDLNGARNLLNHLKPEGQR 416

Query: 413 DGEQLQLMLAESSLLRDANRNQEAADVLKGGLQRFPNNTDLLYDYSMVLEKLGKYDEMEK 472
             EQ+Q+++A++ LLRDANR  EA  +L  GL+RFP +T LLYDY+M+ EK G++D ME 
Sbjct: 417 --EQIQVIVADAQLLRDANRIPEALAILSKGLERFPEDTGLLYDYAMLAEKAGRFDLMEN 474

Query: 473 ALRRVIQLAPGNQQAYNALGYSLADRNVRLPEALELIQKAADMAPEDPFIADSLGWVQFR 532
           +LR++++LAP NQ AYNALGYS A+RN+ L EA  LI KA+ +APEDPFI DS+GWV FR
Sbjct: 475 SLRKIMKLAPSNQHAYNALGYSFAERNIHLQEAYALIDKASKLAPEDPFIMDSMGWVYFR 534

Query: 533 MGRTEQAEAQLRRAYGLRPDVEIGVHLGEVLWANGKQDEARKVWREVSLKEPQNEVLKST 592
           +G+  +AE  LRRAY +RPDVEIGVHLGEVLW  G+++ A+++WRE + K+PQ+++LK+T
Sbjct: 535 LGKLREAEDFLRRAYAIRPDVEIGVHLGEVLWVKGEKEAAQQLWREANQKDPQSDMLKNT 594

Query: 593 LARLNVKL 600
           LARL  KL
Sbjct: 595 LARLRTKL 602


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.129    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 947,795
Number of extensions: 35392
Number of successful extensions: 156
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 513
Effective length of database: 713,682
Effective search space: 366118866
Effective search space used: 366118866
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)