BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3814.p
         (273 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096049|ref|YP_001101124.1| formamidopyrimidine-DNA glycosy...   455   e-129

>gi|134096049|ref|YP_001101124.1| formamidopyrimidine-DNA
           glycosylase [Herminiimonas arsenicoxydans]
          Length = 273

 Score =  455 bits (1170), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/273 (78%), Positives = 241/273 (88%)

Query: 1   MPELPEVEVTRRGVAPYLEGQTVSGVVMRHTGLRWPFPSGLQALLAGRVIRSTGRRGKYL 60
           MPELPEVEVTRRGVAPYLEGQ VSGVV+RHTGLRWPFP+ L   LAGR IRSTGRRGKYL
Sbjct: 1   MPELPEVEVTRRGVAPYLEGQVVSGVVLRHTGLRWPFPAALSQTLAGRTIRSTGRRGKYL 60

Query: 61  LIHFDHGTLIVHLGMSGHLRILPPGIAPQKHDHFDLEVGGQVMRMTDPRRFGAILWHDLA 120
           LIHFDHGTLIVHLGMSGH+RILP G+ PQKHDHFD+ VG QV+R+TDPRRFGA+LWH   
Sbjct: 61  LIHFDHGTLIVHLGMSGHIRILPLGVPPQKHDHFDMTVGNQVLRLTDPRRFGAVLWHAAE 120

Query: 121 DGHIEEHLLLRSLGLEPLEDKFSARALFQQTRGRSAPIKQVLLAGDIVVGVGNIYASESL 180
           +G +++HLLLR+LG+EPLE  F+A+ L++QTR R + IKQVLLAGDIVVGVGNIYASESL
Sbjct: 121 EGAVDQHLLLRTLGVEPLEGLFTAQWLYRQTRSRRSAIKQVLLAGDIVVGVGNIYASESL 180

Query: 181 FKARINPKTPAYKISLARYERLAEAIRETLAAAIEQGGSTLRDFIAVNGQSGYFQQNYFV 240
           F+A INPKT A++I L RYERLA+AIRE LAAAI QGGSTL+DFI VNGQSGYFQQNYFV
Sbjct: 181 FQAGINPKTQAHRIGLQRYERLAQAIREILAAAIAQGGSTLKDFIGVNGQSGYFQQNYFV 240

Query: 241 YNRTGEPCRICATPIRQIKQGQRSTFYCVSCQK 273
           Y RTGEPCRIC  P+RQI QGQRSTFYC +CQK
Sbjct: 241 YARTGEPCRICNAPVRQIVQGQRSTFYCPNCQK 273


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 510,054
Number of extensions: 20056
Number of successful extensions: 56
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 193
Effective length of database: 736,747
Effective search space: 142192171
Effective search space used: 142192171
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)