BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3813.p
         (380 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096047|ref|YP_001101122.1| adenine DNA glycosylase [Hermin...   503   e-144

>gi|134096047|ref|YP_001101122.1| adenine DNA glycosylase
           [Herminiimonas arsenicoxydans]
          Length = 391

 Score =  503 bits (1296), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 251/383 (65%), Positives = 287/383 (74%), Gaps = 10/383 (2%)

Query: 3   GIVESRRKTAAPG-DATGEQYEDPSFAAAVIAWQKQHGRHQLPWQNTRDAYRVWLSEIML 61
           G+V + +KTA+    A      DP+F+ AVI WQKQHGRH LPWQNTRD YRVWLSEIML
Sbjct: 11  GVVSAGKKTASTTISAHVAALADPTFSHAVIHWQKQHGRHALPWQNTRDPYRVWLSEIML 70

Query: 62  QQTQVAAVIPYYQRFLERCPDVFALASSPSEEVMALWSGLGYYTRARNLHKCAQRVVEQY 121
           QQTQVAAVIPYY RFL   P V +LA++PSEEVMA WSGLGYY+RARNLHKCAQ +V  +
Sbjct: 71  QQTQVAAVIPYYLRFLASFPTVASLAAAPSEEVMAHWSGLGYYSRARNLHKCAQAIVSMH 130

Query: 122 GGRFPDDPALLAELPGIGRSTAAAIAAFSYGRRAAILDGNVKRVFARVFGIDGYPGAKPI 181
           GG FP DP LL +LPGIGRSTAAAIAAFSYG RAAILDGNVKRVFARVFG++ YPG K +
Sbjct: 131 GGVFPGDPVLLEQLPGIGRSTAAAIAAFSYGTRAAILDGNVKRVFARVFGVERYPGEKAV 190

Query: 182 EDKLWLRAVALLPDEDIESYTQGLMDLGATLCVRGKPSCGRCPLAGRCVALAEDRVGELP 241
           E++LWLRAVALLP+  +ESYTQGLMDLGATLC R +PSC RCPL  RCVA A DR  ELP
Sbjct: 191 ENELWLRAVALLPEAGVESYTQGLMDLGATLCTRNRPSCNRCPLVQRCVAYATDRTSELP 250

Query: 242 VSKPKKAVPEKETVMLVITQGADVLLEQRPDSGIWGGLLSLPEI------GVSDAVRFDS 295
           + KPKKAVPEK T ML+I  G  +LLEQRPD GIWGGLLSLPE+      G +D   FD 
Sbjct: 251 IRKPKKAVPEKATAMLLIIDGDQILLEQRPDKGIWGGLLSLPEMDAALQPGTTD---FDI 307

Query: 296 AVRTLVAPYGELEGCRKLQPFSHVFTHFKLHVAPFQVALKSRTLHIAERGLVWYPTRKLA 355
           A+    A  G      KL  FSH FTHFKLHV P+++AL  R     +    WYPT ++A
Sbjct: 308 ALAHATAACGVPVSVEKLPQFSHTFTHFKLHVTPYRIALAQRLQSAGQSSHNWYPTARMA 367

Query: 356 DAPLPAPVKKLLLGVLHSDDLLA 378
           +APLPAPVKKLLL V  + DLL+
Sbjct: 368 NAPLPAPVKKLLLEVFRAPDLLS 390


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 731,533
Number of extensions: 30550
Number of successful extensions: 78
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 297
Effective length of database: 726,862
Effective search space: 215878014
Effective search space used: 215878014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)