BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3811.p
         (312 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096044|ref|YP_001101119.1| HPr kinase/phosphorylase [Hermi...   546   e-157

>gi|134096044|ref|YP_001101119.1| HPr kinase/phosphorylase
           [Herminiimonas arsenicoxydans]
          Length = 313

 Score =  546 bits (1408), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 266/312 (85%), Positives = 292/312 (93%)

Query: 1   MPTYSALSIQQLYEENRESLQLGWFAGFPGGERLISGDAVSASDQVGHLNLIHPGRLQVF 60
           MP    LSIQQLY++NRESLQLGWFAGFPGGERLI GDA SA+DQVGHLNLIHPGR+Q+F
Sbjct: 1   MPLPIPLSIQQLYDDNRESLQLGWFAGFPGGERLILGDATSAADQVGHLNLIHPGRIQIF 60

Query: 61  GHQEIEYYNRLSNTSRAYQTAELVAGEPPAFIIAQGLSTPPDLLAVCDEKNIPLFSTPLP 120
           GHQE+EYY RLS  +RA+ +AELVAG+PPAFIIAQGL TP D++A+CDEKNIPLFSTPLP
Sbjct: 61  GHQEVEYYKRLSPIARAHHSAELVAGQPPAFIIAQGLETPEDIMAICDEKNIPLFSTPLP 120

Query: 121 AAQVIDYLRVYLSKKLAQQITMHGVFMDVLGVGVLITGESGLGKSELGLELISRSHGLVA 180
           AAQVID+LRVYLSKKLAQ+ITMHGVFMDVLGVGVLITGESGLGKSELGLELISR+HGLVA
Sbjct: 121 AAQVIDFLRVYLSKKLAQRITMHGVFMDVLGVGVLITGESGLGKSELGLELISRNHGLVA 180

Query: 181 DDAVEFARIAPNMIEGRCPPLLQNLLEVRGLGLLDIKAIFGETAVRRKMRLKLIVHLVRR 240
           DDAVEFARIAP+MIEGRCPPLLQNLLEVRGLGLLDI+ IFGETAVRRKMRLKLIVHLVRR
Sbjct: 181 DDAVEFARIAPHMIEGRCPPLLQNLLEVRGLGLLDIRTIFGETAVRRKMRLKLIVHLVRR 240

Query: 241 STLEENYERLPLDAQYEEVLGLPIRKVVIPVAAGRNIAVLLEAAVRNTILQLRGIDTLKE 300
           STLEENYERLPL +Q EE+LGL IRKVVIPV AGRN+AVLLEAAVRNTILQLRGIDTLK+
Sbjct: 241 STLEENYERLPLPSQSEEILGLSIRKVVIPVEAGRNLAVLLEAAVRNTILQLRGIDTLKD 300

Query: 301 FIERQRRAMNGE 312
           F+ RQ++AM  +
Sbjct: 301 FMIRQQKAMESD 312


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.139    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 554,990
Number of extensions: 21864
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 230
Effective length of database: 730,157
Effective search space: 167936110
Effective search space used: 167936110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)