BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3807.p
         (508 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096021|ref|YP_001101096.1| threonine deaminase [Herminiimo...   855   0.0  
gi|134095736|ref|YP_001100811.1| O-acetylserine sulfhydrylase [H...    61   1e-10

>gi|134096021|ref|YP_001101096.1| threonine deaminase [Herminiimonas
           arsenicoxydans]
          Length = 507

 Score =  855 bits (2209), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 419/507 (82%), Positives = 459/507 (90%)

Query: 1   MSNDYLKKILTARVYDVAQETPLELANTLSQRIDNRIYFKREDMQSVFSFKLRGAYNKMA 60
           M+ DYLKKILTARVYDVA E+PLELA TLSQR  N+IYFKRED+QSVFSFKLRGAYNKMA
Sbjct: 1   MTTDYLKKILTARVYDVAVESPLELAPTLSQRFGNQIYFKREDIQSVFSFKLRGAYNKMA 60

Query: 61  HLTPAQLKRGVICASAGNHAQGVALSAARLGCRAVIVMPTTTPQVKIDAVKARGGEVVLF 120
           HL PAQ+KRGVICASAGNHAQGVALSAARLGCRAVIVMPTTTP VKI+AVKARGGEVVLF
Sbjct: 61  HLPPAQMKRGVICASAGNHAQGVALSAARLGCRAVIVMPTTTPSVKIEAVKARGGEVVLF 120

Query: 121 GDSFTDAYEHALTLEKKQKLTFVHPFDDPYVIAGQGTVGMEILRQHPDPIHAIFVAIGGG 180
           GDS++DAY+HALTLEKK KLTFVHPFDDP VIAGQGT+GMEILRQH  PIHAIFV IGGG
Sbjct: 121 GDSYSDAYQHALTLEKKLKLTFVHPFDDPDVIAGQGTIGMEILRQHSGPIHAIFVPIGGG 180

Query: 181 GLIAGVASYVKAVRPDIKVIGVQTTDSDAMARSLKAGRRVALPDVGLFSDGTAVKLVGEE 240
           GLIAG+ +YVKAVRPDIK+IGVQT DSDAMARSL++ RRV + DVGLF+DGTAVKLVGEE
Sbjct: 181 GLIAGIGAYVKAVRPDIKIIGVQTVDSDAMARSLQSNRRVTMTDVGLFADGTAVKLVGEE 240

Query: 241 TFRIAKELVDDVIIVDTDAVCTAIKDIFQDTRSIVEPAGALAVAGAKAYVERAKASKKPI 300
           TFR+AK  VDD+I+V TD VC+AIKD+FQDTRSI+EP+GAL+VAGAKAY+ERA A KKPI
Sbjct: 241 TFRLAKLYVDDIILVSTDEVCSAIKDVFQDTRSILEPSGALSVAGAKAYIERAHADKKPI 300

Query: 301 KGESLITIACGANMNFDRLRFVAEMADAGEAREAVFAVTIPEERGSFRRFCETVGPRNVT 360
           K E+LITIA GANMNFDRLRFVAEMAD G ARE VFAVTIPEERGSF+RFCE VGPRNVT
Sbjct: 301 KNETLITIASGANMNFDRLRFVAEMADVGAAREGVFAVTIPEERGSFKRFCELVGPRNVT 360

Query: 361 EFNYRISDAKAAHVFVGIQVSAADEAGKIARNFEKAGFGVLDLTHDELAKVHIRHLVGGK 420
           EFNYR+SDAK AH+FVG+Q++  DEAGKIAR FEK GF  LDLTHDELAK HIRHLVGGK
Sbjct: 361 EFNYRLSDAKQAHIFVGLQIADRDEAGKIARRFEKHGFKTLDLTHDELAKGHIRHLVGGK 420

Query: 421 SELAGDELLYRFEFPERPGALMKFLSSMNPGWNISLFHYRNQGGDVGRILIGLQVPKKEM 480
           S+L  DELLYRFEFPERPGALM+FL S+ P WNISLFHYRN+GGDV RIL+G+QVPKKEM
Sbjct: 421 SDLTHDELLYRFEFPERPGALMRFLDSVAPHWNISLFHYRNEGGDVSRILVGIQVPKKEM 480

Query: 481 KELRAFLAQLGYRHWDETKNPLYKLFL 507
           K  RA LA LGYRHWDET NP+YKLFL
Sbjct: 481 KTFRASLAGLGYRHWDETDNPVYKLFL 507


>gi|134095736|ref|YP_001100811.1| O-acetylserine sulfhydrylase
           [Herminiimonas arsenicoxydans]
          Length = 300

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 92/204 (45%), Gaps = 18/204 (8%)

Query: 14  VYDVAQETPL----ELANTLSQRIDNRIYFKREDMQSVFSFKLRGAYNKMAHLTP-AQLK 68
           + D    TPL     +    S R +N I  K E      S K R A + + H      +K
Sbjct: 6   IEDTIGNTPLVQLKRMDGEESARRNNVILGKLEGNNPAGSVKDRPALSMIKHAEERGTIK 65

Query: 69  RG--VICASAGNHAQGVALSAARLGCRAVIVMPTTTPQVKIDAVKARGGEVVLFGDSFTD 126
            G  +I A++GN    +A+ AA  G + +++MP    + +  A+ A G ++VL   +   
Sbjct: 66  PGDTLIEATSGNTGIALAMVAAMRGYKMILLMPENLSEERRQAMAAYGAKIVLTPKAGGM 125

Query: 127 AYEHALTLEKKQKL-------TFVHPFDDPYVIAGQGTVGMEILRQHPDPIHAIFVAIGG 179
            Y   L  E+ QK         F +P D+P   +   T G EI R     I     A+G 
Sbjct: 126 EYARDLA-EQMQKNGEGLILDQFANP-DNPR--SHYETTGPEIWRDTGGKITHFISAMGT 181

Query: 180 GGLIAGVASYVKAVRPDIKVIGVQ 203
            G I GV+ Y+K   PDI++IGVQ
Sbjct: 182 TGTIIGVSEYLKEKNPDIRIIGVQ 205


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 864,278
Number of extensions: 33658
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 508
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 422
Effective length of database: 716,977
Effective search space: 302564294
Effective search space used: 302564294
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)