BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3806.p
         (163 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096020|ref|YP_001101095.1| putative integral membrane prot...   249   5e-68

>gi|134096020|ref|YP_001101095.1| putative integral membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 162

 Score =  249 bits (636), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 120/158 (75%), Positives = 139/158 (87%)

Query: 1   MIESAVLWLLNILAIPTVGLTSVFLISFVSATLLPLGSEPAVFAVIKASPEMFWPVILVA 60
           MI++ V WLL +LA P VGL+SVF+ISF+SATLLPLGSEPAVFAVIKA+  +FWP ILVA
Sbjct: 1   MIDAVVQWLLAVLAAPQVGLSSVFVISFLSATLLPLGSEPAVFAVIKANTALFWPAILVA 60

Query: 61  TVGNTLGGIVDYWMGYGAKQAFAKERSTRWFHWLERFGAKTMLLAWLPGIGDPICTLAGW 120
           T GNTLGGIV+YWMG GAKQ FA+E+ TRWF WL+RFGAKTMLLAWLPGIGDP+C LAGW
Sbjct: 61  TTGNTLGGIVNYWMGIGAKQVFAREKQTRWFGWLQRFGAKTMLLAWLPGIGDPLCLLAGW 120

Query: 121 LRLPFWPSVVYMAIGKFIRYVLMTWLLLNVPDGFWHKL 158
           L+LPFWP V+YMAIGKF+RYV ++WLLL+VPDG W  L
Sbjct: 121 LKLPFWPCVLYMAIGKFLRYVTISWLLLHVPDGVWQYL 158


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.143    0.496 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 355,425
Number of extensions: 14760
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 88
Effective length of database: 753,222
Effective search space: 66283536
Effective search space used: 66283536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)