BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3805.p (1333 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096019|ref|YP_001101094.1| putative fusion protein of flav... 2376 0.0 gi|134093565|ref|YP_001098640.1| glycolate oxidase subunit glcD ... 97 6e-21 gi|134094432|ref|YP_001099507.1| putative oxidoreductase [Hermin... 86 2e-17 gi|134093567|ref|YP_001098642.1| glycolate oxidase iron-sulfur s... 72 2e-13 >gi|134096019|ref|YP_001101094.1| putative fusion protein of flavin-containing oxidoreductase and iron-sulfur-containing oxidoreductase [Herminiimonas arsenicoxydans] Length = 1332 Score = 2376 bits (6157), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1132/1333 (84%), Positives = 1223/1333 (91%), Gaps = 1/1333 (0%) Query: 1 MNAPAQIQALLTDAPHGAALPRLREIPYNYTSFSDREIVIRLLGESSWSLLDELRGKRQT 60 MNAP QIQ LL DAP GA RLREIPYNYTSFSDREIV+RLLGE +WSLL ELR +RQT Sbjct: 1 MNAPVQIQNLLADAPGGAVPTRLREIPYNYTSFSDREIVMRLLGEDAWSLLSELRSERQT 60 Query: 61 GRSARMLYEVLGDIWVVRRNPYLQDDLLDNPKRRAALIEALNHRINEVDKRRLATDSAEA 120 GRSARMLYEVLGDIWVV+RNPYLQDDLLDNPKRR ALI+ALNHR+ E+DKRR D A A Sbjct: 61 GRSARMLYEVLGDIWVVQRNPYLQDDLLDNPKRRQALIDALNHRLTEIDKRR-KNDLAAA 119 Query: 121 GDADAQRRSASVEALLKAAKKAIGDFAEEFRQTYDLRRRATKVLGRYTARDNIKFDGLSR 180 GDA+A+ R+ +VEAL+++A KA+ F EEFR+TYDLR+R KVLGRYTA+DNIKFDGLSR Sbjct: 120 GDANAEHRAEAVEALVQSAIKAVAAFGEEFRKTYDLRKRTNKVLGRYTAKDNIKFDGLSR 179 Query: 181 VSHVTDATDWRVEYPFVVLTPDTEDEMAGLVKACIELGLTIIPRGGGTGYTGGAIPLTPL 240 VSHVTDATDWRVEYPFVVLTPD E+EMAGLVK CIELGLTIIPRGGGTGYTGGAIPLTP+ Sbjct: 180 VSHVTDATDWRVEYPFVVLTPDCENEMAGLVKGCIELGLTIIPRGGGTGYTGGAIPLTPM 239 Query: 241 SAVINTEKLEQLGAVEMTMLPGVDKPYATIYSGAGVVTKRVSDAAEKAGFVFAVDPTSAE 300 SAVINTEKLE LGAVEMTMLPGVD+ YATIYSGAGVVTKRV+DAAEKAGFVFAVDPTSAE Sbjct: 240 SAVINTEKLEALGAVEMTMLPGVDREYATIYSGAGVVTKRVADAAEKAGFVFAVDPTSAE 299 Query: 301 ASCIGGNVAMNAGGKKAVLWGTALDNLASWRMVDPQGDWLEVTRLDHNLGKIHDVEVARF 360 ASCIGGN+AMNAGGKKAVLWGTALDNLASWRMVDP GDWLEVTRL+HNLGKIHD VA+F Sbjct: 300 ASCIGGNIAMNAGGKKAVLWGTALDNLASWRMVDPNGDWLEVTRLEHNLGKIHDAPVAKF 359 Query: 361 KLEWSHPGEKGQKTEVFKTEILEISGKKFRKEGLGKDVTDKFLSGLPGVQKEGCDGLITS 420 KLEW+HPGEKG+ + FKTE LEI G+ FRKEGLGKDVTDKFLSGLPGVQKEGCDGLITS Sbjct: 360 KLEWTHPGEKGRVNQPFKTETLEIVGRTFRKEGLGKDVTDKFLSGLPGVQKEGCDGLITS 419 Query: 421 ARWILHKMPKQTRTVCLEFFGQARDAIPSIVEIKDYLDAETKKGGAILAGLEHLDERYLR 480 ARWILHKMPK TRTVCLEFFG +RDAIPSIVEIKD+LD +T+KGGAILAGLEHLDERYLR Sbjct: 420 ARWILHKMPKHTRTVCLEFFGHSRDAIPSIVEIKDFLDEQTRKGGAILAGLEHLDERYLR 479 Query: 481 AVGYATKSKRGVLPKMVLIGDIVGDDENAVAAAASEVIRMANNRVGEGFVAVSPEARKKF 540 AVGYATKSKRG LPKM L GDIVGDDENAVA AASEV+R+AN RVGEGF+AVSPEARKKF Sbjct: 480 AVGYATKSKRGTLPKMALFGDIVGDDENAVAQAASEVVRLANTRVGEGFIAVSPEARKKF 539 Query: 541 WLDRSRTAAIAKHTNAFKINEDVVIPLNRMGEYTDGIERINIELSIKNKLQLLAELDSFF 600 WLDR+RTAAI+KHTNAFKINEDVVIPL+RMGEY+DGIERIN+ELSIKNKLQ L EL +FF Sbjct: 540 WLDRARTAAISKHTNAFKINEDVVIPLDRMGEYSDGIERINVELSIKNKLQFLDELHAFF 599 Query: 601 VKGNLPLGKSDDAEGDDIPAAEMLEDRVHQAESLLEQTHARWSYLLANLDKPLGEAKGEL 660 KGNLPLGKSDDAEG++IPAAE+LEDRVHQAE L+ T ARW+Y+L NLD L +AK +L Sbjct: 600 AKGNLPLGKSDDAEGEEIPAAELLEDRVHQAEDLIAATQARWAYVLGNLDTSLRDAKEQL 659 Query: 661 AALGLEKMLPVFEQRLIDQPEAAVFHVVQDRTVRISWKQEVRAQLRQIFSGAAFKPILEE 720 ALG+EK+ F++RL QP A VF VVQDRTVRISWK E R LRQIFSGAAF+ ILEE Sbjct: 660 LALGMEKLGSAFDERLALQPNATVFDVVQDRTVRISWKAEARVPLRQIFSGAAFRLILEE 719 Query: 721 CQAIHKRVLRGRVFVALHMHAGDGNVHTNIPVNSDHYDMLQDAHVAVARIMKLARSLNGV 780 AIHK+VLRGRVFVALHMHAGDGNVHTNIPVNSDHY MLQDAH AVARIMKLARSLNGV Sbjct: 720 ANAIHKQVLRGRVFVALHMHAGDGNVHTNIPVNSDHYQMLQDAHAAVARIMKLARSLNGV 779 Query: 781 ISGEHGIGITKLEFLTEDEIGEFREYKKRVDPEGRFNKGKLLNLPGMEADLSNAYTPSFG 840 ISGEHGIGITKLEFLT +E+ +FR YKKR+DP+G FNKGKL+++ + ADL NAYTPSFG Sbjct: 780 ISGEHGIGITKLEFLTSEELADFRSYKKRIDPDGHFNKGKLMDMSELSADLRNAYTPSFG 839 Query: 841 LMGHESLIMQQSDIGAIASSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILATSLLVEA 900 LMGHESLIMQQSDIGAIA+SVKDCLRCGKCKPVC+THVPRANLLYSPRNKILATSLLVEA Sbjct: 840 LMGHESLIMQQSDIGAIANSVKDCLRCGKCKPVCATHVPRANLLYSPRNKILATSLLVEA 899 Query: 901 FLYEEQTRRGVSIKHWEEFEDVADHCTVCHKCVTPCPVDIDFGDVSMNMRNLLRKMGKKS 960 FLYEEQTRRG+SIKHWEEFEDVADHCTVCHKC+TPCPVDIDFGDVSMNMRNLLRKM KKS Sbjct: 900 FLYEEQTRRGISIKHWEEFEDVADHCTVCHKCLTPCPVDIDFGDVSMNMRNLLRKMDKKS 959 Query: 961 FNAGTNAAMFFLNATDPATINATRKVMTQWGFKAQRLGNDLMKKFAKKQTQKPPATVGKP 1020 FN GT A+MFFLNATDPATINATRKVM WG+KAQR G+D KK AKKQT P +TVGKP Sbjct: 960 FNPGTAASMFFLNATDPATINATRKVMIDWGYKAQRFGHDFFKKLAKKQTAAPKSTVGKP 1019 Query: 1021 PVKEQVIHFINKKMPGNLPKKTARALLDIEDDKIVPIIRNPKTTTADTEAVFYFPGCGSE 1080 PVKEQVIHFINKKMPGNLPKKTARALLDIEDDK+VPIIR+PKTTT DTEAVFYFPGCGSE Sbjct: 1020 PVKEQVIHFINKKMPGNLPKKTARALLDIEDDKVVPIIRDPKTTTMDTEAVFYFPGCGSE 1079 Query: 1081 RLFSQVGLATQAMLWNVGVQTVLPPGYLCCGYPQRGTGDFEKGEKIITDNRVLFHRMANT 1140 RLFSQVGLATQAMLWNVGVQTVLPPGYLCCGYPQRGTG+++K EKIITDNRVLFHRMANT Sbjct: 1080 RLFSQVGLATQAMLWNVGVQTVLPPGYLCCGYPQRGTGNYDKAEKIITDNRVLFHRMANT 1139 Query: 1141 LNYLDIKTVVVSCGTCYDQLQGYEFEKIFPGCRIIDIHEYLLEKGVKLEGVTGTRYMYHD 1200 LNYLDIKTV+VSCGTCYDQLQGYEFEKIFPGCRIIDIHEYL+EKGVKLEGV G RYMYHD Sbjct: 1140 LNYLDIKTVIVSCGTCYDQLQGYEFEKIFPGCRIIDIHEYLMEKGVKLEGVNGVRYMYHD 1199 Query: 1201 PCHSPMKQQDPLKTVNSLITTVDAQKIEKNDRCCGESGTFGVSRPDVSTQVRFRKEEEMK 1260 PCH+PMK QDPLKTVN+LITTVD QKIEKNDRCCGESGT V+RPD+STQVRFRKEEEM Sbjct: 1200 PCHTPMKLQDPLKTVNALITTVDDQKIEKNDRCCGESGTLAVTRPDISTQVRFRKEEEMT 1259 Query: 1261 KGSDKVRADGFAGDVKILTSCPSCFQGLSRYNDDAGTTADYIVVEMARHLLGENWMPEYV 1320 KG+DK+RADGFAG+VKILTSCPSC QGLSRYNDD+ TTADYIVVEMA+HLLG NW+PEYV Sbjct: 1260 KGADKLRADGFAGEVKILTSCPSCLQGLSRYNDDSETTADYIVVEMAKHLLGPNWLPEYV 1319 Query: 1321 ERANNGGIERILV 1333 RANNGGIER+LV Sbjct: 1320 ARANNGGIERVLV 1332 >gi|134093565|ref|YP_001098640.1| glycolate oxidase subunit glcD [Herminiimonas arsenicoxydans] Length = 512 Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 100/408 (24%), Positives = 161/408 (39%), Gaps = 80/408 (19%) Query: 186 DATDWRVEYPFVVLTPDTEDEMAGLVKACIELGLTIIPRGGGTGYTGGAIPLTPLSAVIN 245 D + P VV+ P E + ++K C +L + ++PRG GTG +GGA+P+ V++ Sbjct: 60 DGLAAYAQLPMVVVLPLNEAHVIAVLKVCRDLSVRVVPRGAGTGLSGGALPIAD-GIVLS 118 Query: 246 TEKLEQLGAVEMTMLPGVDKPYATIYSGAGVVTKRVSDAAEKAGFVFAVDPTSAEASCIG 305 T +L ++ V+ V +P GV +S+A G +A DP+S A IG Sbjct: 119 TARLNKIVKVDAYARTAVVQP--------GVRNLAISEAVASLGLYYAPDPSSQIACTIG 170 Query: 306 GNVAMNAGGKKAVLWGTALDNLASWRMVDPQGDWLEVTRLDHNLGKIHDVEVARFKLEWS 365 GNVA N+GG + +G + N+ R+V +GD Sbjct: 171 GNVAENSGGVHCLKYGLTVHNVMRVRVVTIEGD--------------------------- 203 Query: 366 HPGEKGQKTEVFKTEILEISGKKFRKEGLGKDVTDKFLSGLPGVQKEGCDGLITSARWIL 425 ++E+ GL D+ F V EG G++T L Sbjct: 204 ---------------VIELGNAALDAPGL--DLLSVF------VGSEGMLGIVTEVTVKL 240 Query: 426 HKMPKQTRTVCLEF--FGQARDAIPSIVEIKDYLDAETKKGGAILAGLEHLDERYLRAVG 483 PK R + F + +A+ S++ G I AGLE +D+ R V Sbjct: 241 IPKPKLARVILASFDDVVKGGNAVASVI-----------AAGIIPAGLEMMDKTSTRMVE 289 Query: 484 YATKSKRGVLPKMVLIGDIVGDDENAVAAAASEVIRMAN--NRVGEGFVAVSPE--ARKK 539 K+ + + +L+ + G E E+ RM G +AVS + R K Sbjct: 290 PFVKAGYDIDAEAILLCESDGIPEE----VEEEIARMTEVLKHSGATAIAVSQDEAERLK 345 Query: 540 FWLDRSRTAAIAKHTNAFKINEDVVIPLNRMGEYTDGIERINIELSIK 587 FW R A + D IP R+ E GI ++ ++ ++ Sbjct: 346 FWSGRKNAFPAAGRISPDYYCIDGTIPRRRLAEVLQGIAQMEVKYGLR 393 >gi|134094432|ref|YP_001099507.1| putative oxidoreductase [Herminiimonas arsenicoxydans] Length = 469 Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 94/395 (23%), Positives = 153/395 (38%), Gaps = 74/395 (18%) Query: 188 TDWRVEY---PFVVLTPDTEDEMAGLVKACIELGLTIIPRGGGTGYTGGAIPLTPLSAVI 244 TDWR + F V+ P +E+A +V+ C + + I+P+GG TG G+IP +A++ Sbjct: 29 TDWRRRFTGSAFAVVKPACTEEVAAIVRLCHQFHVPIVPQGGNTGLVLGSIPDASNTAIV 88 Query: 245 NTEKLEQLGAVEMTMLPGVDKPYATIYSGAGVVTKRVSDAAEKAGFVFAVDPTSAEASCI 304 L + + +D T+ +G + + V AA AG +F + S + I Sbjct: 89 -------LSLTRLNRIRAIDSVNNTMTVESGCILQNVQQAAADAGRLFPLSLASEGSCTI 141 Query: 305 GGNVAMNAGGKKAVLWGTALDNLASWRMVDPQGDWLEVTRLDHNLGKIHDVEVARFKLEW 364 GGN++ NAGG + +G A + +V PQG+ W Sbjct: 142 GGNLSSNAGGTAVLRYGNARELCLGLEVVTPQGEL------------------------W 177 Query: 365 SHPGEKGQKTEVFKTEILEISGKKFRKEGLGKDVTDKFLSGLPGVQKEGCDGLITSARWI 424 + G +G RK+ G D+ D ++ EG G+IT+A Sbjct: 178 N--GLRG-----------------LRKDNTGYDLRDLYIGA------EGTLGIITAAVLK 212 Query: 425 LHKMPKQTRTVCLEFFGQARDAIPSIVEIKDYLDAETKKGGAILAGLEHLDERYLRAVG- 483 L +PK RT A A+ S L + + L G E + L VG Sbjct: 213 LSPLPKAQRT--------ALAALRSPDAALRLLTLAQMRCNSALTGFELMSAFCLTLVGR 264 Query: 484 ---YATKSKRGVLPKMVLIGDIVGDDENAVAAAASEVI--RMANNRVGEGFVAVSPEARK 538 S R + VL+ + E E+I + + V + VA S Sbjct: 265 HFPQMHLSFREQHAQYVLLELSDSESEEHANTLLEELIGDALQQDIVQDAIVATSLAQSA 324 Query: 539 KFWLDRSRTAAIAKHTNAFKINEDVVIPLNRMGEY 573 W D +A+ I DV +P++ +G++ Sbjct: 325 ALW-DIREHIPLAQAAEGKNIKHDVSLPISVIGDF 358 >gi|134093567|ref|YP_001098642.1| glycolate oxidase iron-sulfur subunit [Herminiimonas arsenicoxydans] Length = 410 Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 90/410 (21%), Positives = 141/410 (34%), Gaps = 82/410 (20%) Query: 861 VKDCLRCGKCKPVCSTHVPRANLLYSPRNKILATSLLVEAFLYEEQTRRGVSIKHWEEFE 920 ++ C+ CG C C T+ + L PR +I ++E +T+ + Sbjct: 22 LRSCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGKTPTAKTQLHL--------- 72 Query: 921 DVADHCTVCHKCVTPCPVDIDFGDVSMNMRNLLRKMGKKSFNAGTNAAMFFLNATDPATI 980 D C C C T CP + +G + R ++ + SF TN L P Sbjct: 73 ---DRCLTCRNCETTCPSGVQYGRLIDIGRKVVEERVPYSF--ATNLKRTALRELLP--- 124 Query: 981 NATRKVMTQWGFKAQRLGNDLMKKFAKKQTQKPPATVGKPPVKEQVIHFINKKMPGNLPK 1040 +W F L + K Q K P KE G P Sbjct: 125 -------RKWLFTPAMKTGQLFRPLLPKSLQN------KVPRKENA---------GAWP- 161 Query: 1041 KTARALLDIEDDKIVPIIRNPKTTTADTEAVFYFPGCGSERLFSQVGLATQAMLWNVGVQ 1100 T A + GC + + AT + +GVQ Sbjct: 162 -----------------------TRAHARKMLLLDGCAQPAMSPNINAATARVFDALGVQ 198 Query: 1101 TVLPPGYLCCGYPQRGTGDFEKGEKIITDNRVLFHRMANTLNYLDIKTVVVSCGTC---- 1156 V+ P CCG + D + + N + + + +V++ C Sbjct: 199 LVVAPKAGCCGAIRHHLNDHDGALDDMRRNIDAWWPLVEA----GAEAIVMTASGCGVMV 254 Query: 1157 --YDQLQGYEFEKIFPGCRIIDIHEYL--------LEKGVKLEGVTGTRYMYHDPCHSPM 1206 Y L ++ + RI D+ + L LE ++L G G R +YH PC Sbjct: 255 KDYGHLLAHDAKYADKAQRISDLTKDLSEILPAFELELQIRLNGKIGKRVVYHPPCTLQH 314 Query: 1207 KQQDPLKTVNSL-ITTVDAQKIEKNDRCCGESGTFGVSRPDVSTQVRFRK 1255 QQ K L VD Q + + CCG +GT+ V +P++S Q+R +K Sbjct: 315 GQQIRGKVEGVLRAVGVDVQLCKDSHLCCGSAGTYSVLQPELSYQLRDQK 364 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 2,543,838 Number of extensions: 107374 Number of successful extensions: 311 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 307 Number of HSP's successfully gapped: 4 Length of query: 1333 Length of database: 1,000,347 Length adjustment: 93 Effective length of query: 1240 Effective length of database: 693,912 Effective search space: 860450880 Effective search space used: 860450880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 135 (56.6 bits)