BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3801.p
         (321 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096015|ref|YP_001101090.1| hypothetical protein HEAR2855 [...   253   1e-68

>gi|134096015|ref|YP_001101090.1| hypothetical protein HEAR2855
           [Herminiimonas arsenicoxydans]
          Length = 315

 Score =  253 bits (645), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 161/329 (48%), Positives = 209/329 (63%), Gaps = 22/329 (6%)

Query: 1   MKKILLALLLAMTSLSLIMSPAEAKRLGGGGSFGKQSSNYSRQAAPSAPSSPSYSQPAAT 60
           MKK+L+AL++  +S++LI    EAKR+GGGGSFGKQS ++ R A P         Q +AT
Sbjct: 1   MKKLLMALVVVASSMTLIAPQVEAKRMGGGGSFGKQSQSFKRAAPP---------QQSAT 51

Query: 61  PYRPSAPTATPQSAPMSRPASPWRNMLGGALLGFGLGALMSHFGIGGAMGGMLGSLLTIL 120
           P +P+A  A   +A  +   S  RN+LGGALLG GLGAL+SH GIGGA+  M+ ++L + 
Sbjct: 52  PAKPAAAPAAAGAAGAAAKPSMMRNILGGALLGLGLGALLSHLGIGGALASMISTMLMVG 111

Query: 121 LLCVAVIFLVRLF-ARGRQAQSNNPAYATPMPGVSPIGSAAGATPEIGSGLRDINPPPAA 179
           L   A +F+ R+  A+   AQ+ N       P      S   +TPEIGS +      P+A
Sbjct: 112 LFAFAAMFIYRMIKAKSAGAQAGNQRNGL-QPSFPNNFSEKSSTPEIGSRIEQPYGQPSA 170

Query: 180 L-------PGAGYAASAQPAQIQHWGIPEGFDTAGFVRNAKTYFIRLQAAWDRADVNDIR 232
           L        G+ + A    A      +P  FD   FVRNAKTYFIRLQAAWD+ADVNDIR
Sbjct: 171 LQSAAPLASGSAFGAGIDAAN----DLPADFDVESFVRNAKTYFIRLQAAWDKADVNDIR 226

Query: 233 EFTTPEMFAELRMQLTERGAAPNATDVVQLDAELLGIETMAFDYLATVRFQGLIKEAPDV 292
           EFTTPEMFAEL+ QL ERGA+ N TDV+ L+    G+ET+  DY+A+++F GLI E    
Sbjct: 227 EFTTPEMFAELKAQLLERGASENHTDVISLEGIFYGVETVGDDYIASIKFTGLINEGAGA 286

Query: 293 SAEPFAEIWNLSKPLNGSGGWVLAGIQQI 321
             EPF+E WNLSKP++G GGWVLAGIQQ+
Sbjct: 287 PTEPFSEAWNLSKPVHGDGGWVLAGIQQL 315


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 450,631
Number of extensions: 14880
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 239
Effective length of database: 730,157
Effective search space: 174507523
Effective search space used: 174507523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)