BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3800.p
         (202 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096014|ref|YP_001101089.1| hypothetical protein HEAR2854 [...   234   2e-63

>gi|134096014|ref|YP_001101089.1| hypothetical protein HEAR2854
           [Herminiimonas arsenicoxydans]
          Length = 196

 Score =  234 bits (598), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 113/190 (59%), Positives = 142/190 (74%)

Query: 11  ALDPMKPAAAVINHLLAQEPWARSTLMAHAGKVACIDTGVMPLRLKVSGDGYLQEVPADA 70
           +  P     A +NHLLAQE WAR+ L+ HAGK+A +D GV+  RLKV+ DG L+    D 
Sbjct: 3   SFSPASIFPAALNHLLAQEAWARAKLIPHAGKIAVLDGGVLAARLKVTADGMLEAAVVDD 62

Query: 71  PANVTIRLKLSDLPLIAANRERAVSYVKLEGDADFANAISQLSQKLRWDAEDDLSRVVGD 130
            A VTIR++L+DLP I  NRERA SYVK+EGDADFAN ISQLSQ LRW+AEDDLS+ VGD
Sbjct: 63  AATVTIRVQLADLPAIMQNRERAFSYVKIEGDADFANTISQLSQGLRWEAEDDLSKFVGD 122

Query: 131 VAAIRIVAGARELFDAARNTGRKLSENLAEYFLEEQPMLIRPRQLQDFSADVVRLRDDLE 190
           +AA R++ GAR      +   + ++EN+AEYFLEE PMLIRP+ + +F+ADV RLRDD+ 
Sbjct: 123 IAANRMMGGARSALGTVKALHQSVAENVAEYFLEENPMLIRPQAVTEFTADVTRLRDDVA 182

Query: 191 RLSKRIEKLE 200
           RLSKRIEKL+
Sbjct: 183 RLSKRIEKLK 192


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 376,387
Number of extensions: 14904
Number of successful extensions: 52
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 125
Effective length of database: 746,632
Effective search space: 93329000
Effective search space used: 93329000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)