BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3797.p
         (266 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093485|ref|YP_001098560.1| indole-3-glycerol-phosphate syn...   446   e-127

>gi|134093485|ref|YP_001098560.1| indole-3-glycerol-phosphate
           synthase [Herminiimonas arsenicoxydans]
          Length = 266

 Score =  446 bits (1146), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 210/266 (78%), Positives = 239/266 (89%)

Query: 1   MSDILNKILAVKAEEIRIAQKQRDLASLRRDVESDSELRSELRNFEQGLRNKIAAGQAGV 60
           MSDILNKILAVKA+E+  A+K R LASLR +VE+D + R+ LRNFE  LR KIAAG AG+
Sbjct: 1   MSDILNKILAVKADEVAAAKKYRSLASLRSEVEADKDARAALRNFEGALRQKIAAGNAGI 60

Query: 61  IAEVKKASPSKGVIRPDFKPAEIAVSYAEHGAACLSVLTDEQFFQGSPEYLKQARAACAL 120
           IAE+KKASPSKG+IRPDF+P +IA SYA+HGAACLSVLTD QFFQGSP+YLKQARAAC+L
Sbjct: 61  IAEIKKASPSKGIIRPDFQPDQIATSYAQHGAACLSVLTDVQFFQGSPDYLKQARAACSL 120

Query: 121 PALRKDFMMDPYQIYQARSWGADAILLIVAALDHGLMADLEACAHELGMSVLVEVHDSAE 180
           P LRKDFM+DPYQIY+ARSWGAD ILLIVA LDHGLMA+LEACAHELGM VLVEVH+  E
Sbjct: 121 PVLRKDFMIDPYQIYEARSWGADCILLIVAGLDHGLMAELEACAHELGMHVLVEVHNGEE 180

Query: 181 LDAALKLKTRLLGINNRNLRTFETTLDTTLNLLPRIPPEKLVVTESAIATPDDVKRMRDA 240
           L+AAL+LKT LLG+NNRNLRTFET+L TTL+LLPRIPPEKLV+TESAI TPDDVK+MRDA
Sbjct: 181 LNAALRLKTTLLGVNNRNLRTFETSLQTTLDLLPRIPPEKLVITESAIVTPDDVKKMRDA 240

Query: 241 DVHAFLVGEAFMRAPEPGVELARLFA 266
           DVHAFL+GE FMRAP+PG EL RLF+
Sbjct: 241 DVHAFLIGETFMRAPDPGQELNRLFS 266


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 455,544
Number of extensions: 16897
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 186
Effective length of database: 736,747
Effective search space: 137034942
Effective search space used: 137034942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)