BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3795.p
         (191 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093487|ref|YP_001098562.1| aminodeoxychorismate synthase s...   323   3e-90
gi|134094394|ref|YP_001099469.1| carbamoyl phosphate synthetase,...    54   6e-09

>gi|134093487|ref|YP_001098562.1| aminodeoxychorismate synthase
           subunit II [Herminiimonas arsenicoxydans]
          Length = 184

 Score =  323 bits (829), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 148/184 (80%), Positives = 166/184 (90%)

Query: 4   MIDNYDSFTYNLVQYFGELGEEVLTIRNDEITLDDIRKLNPERICLSPGPCSPKEAGICV 63
           MIDNYDSFTYNLVQYFGELGEEV+T+RNDEITL++I  L  +RIC+SPGPC+P EAGI +
Sbjct: 1   MIDNYDSFTYNLVQYFGELGEEVVTVRNDEITLEEIEALKADRICVSPGPCTPHEAGISI 60

Query: 64  DLLKEFSGKLPILGVCLGHQAIGEAFGGNIIRAKQVMHGKTSKIAHTGVGVFKDLPSPYT 123
            +L  F+GKLPILGVCLGHQAIG AFGG ++RA+QVMHGKTS I HTG GVFKDLPSPYT
Sbjct: 61  PVLTHFAGKLPILGVCLGHQAIGAAFGGKVVRAQQVMHGKTSLITHTGFGVFKDLPSPYT 120

Query: 124 VIRYHSLAIDRATLPDCLEVTAWTDDGEIMGVRHKQFDLQGVQFHPESILSEHGHALLKN 183
           + RYHSLAI+R++LP CLEVTAWTDDGEIMGVRHK FD+QGVQFHPESILSEHGHALLKN
Sbjct: 121 ITRYHSLAIERSSLPSCLEVTAWTDDGEIMGVRHKDFDIQGVQFHPESILSEHGHALLKN 180

Query: 184 FLTG 187
           FL G
Sbjct: 181 FLVG 184


>gi|134094394|ref|YP_001099469.1| carbamoyl phosphate synthetase,
           glutamine amidotransferase small subunit [Herminiimonas
           arsenicoxydans]
          Length = 342

 Score = 53.5 bits (127), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 74/173 (42%), Gaps = 13/173 (7%)

Query: 13  YNLVQYFGELGEEVLTIRNDEITLDDIRKLNPERICLSPGPCSPKEAGICVDLLKEFSGK 72
           +N+++   E G +V T+   + T  +   L P+ I LS GP  P+     +   KE   +
Sbjct: 165 FNILRMLAERGCKV-TVLPAQATAAEALALKPDGIFLSNGPGDPQPCDYAIAATKELIER 223

Query: 73  -LPILGVCLGHQAIGEAFGGNIIRAKQVMHGKTSKIAHTGVGVFKDLPSPYTVI--RYHS 129
            +P  G+CLGHQ +  A G    +     HG    +        +DL S   +I  + H 
Sbjct: 224 GIPTFGICLGHQIMALASGAKTFKMGFGHHGANHPV--------QDLDSKKVLITSQNHG 275

Query: 130 LAIDRATLPDCLEVTAWT-DDGEIMGVRHKQFDLQGVQFHPESILSEHGHALL 181
            A+D ATLP    VT  +  DG + G           Q HPE+    H  A L
Sbjct: 276 FAVDAATLPANCRVTHVSLFDGSLQGFERTDQPAFCFQGHPEASPGPHDIAPL 328


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.141    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 386,080
Number of extensions: 15822
Number of successful extensions: 30
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 1,000,347
Length adjustment: 77
Effective length of query: 114
Effective length of database: 746,632
Effective search space: 85116048
Effective search space used: 85116048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)