BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3793.p
         (226 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093489|ref|YP_001098564.1| putative phosphoglycolate phosp...   291   2e-80
gi|134095753|ref|YP_001100828.1| phosphoglycolate phosphatase 2 ...    89   2e-19
gi|134095275|ref|YP_001100350.1| putative phosphoglycolate phosp...    65   2e-12

>gi|134093489|ref|YP_001098564.1| putative phosphoglycolate
           phosphatase (PGP) (gph) [Herminiimonas arsenicoxydans]
          Length = 209

 Score =  291 bits (746), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 131/207 (63%), Positives = 168/207 (81%)

Query: 18  MLDTAADFHVAVNRMREELGLTPLSQETIVNFVGKGTENLIRRVLAVDYAEDEAAQYFQQ 77
           ML TA D H+AVNRMRE LGL  L  +T ++FVGKG ENL+R+ + VD++  E    FQ+
Sbjct: 1   MLHTAQDLHIAVNRMREGLGLASLDLDTAISFVGKGAENLVRKSIGVDFSASEVELRFQE 60

Query: 78  ALESYTEHYLAINGDYSSLYPGVLEGLQALRGKGLRLACVTNKPLAFAVPLLQKKGLRDF 137
           A+  + +HY  +NG+++S YPGV EGLQ ++ KGLRLACVTNKP+AF +PL++K GL D+
Sbjct: 61  AMVLFEKHYFDVNGEFASAYPGVHEGLQEMQAKGLRLACVTNKPIAFTLPLMKKTGLHDY 120

Query: 138 FEIVYGGDSFPKKKPDPMPLLQVCQDFGLEPAQVVAIGDSSNDAQAARAAGCRVLNVPYG 197
           FEI+YGGDSF K+KPDPM LLQVC DF L PAQ+VAIGDS ND++AARAAGC+VLNVPYG
Sbjct: 121 FEIIYGGDSFAKRKPDPMQLLQVCADFKLAPAQIVAIGDSINDSKAARAAGCKVLNVPYG 180

Query: 198 YNHGESIHNVDSDGIVSTLVEAAQQIS 224
           YNHG++I +VD+DGIVS+L++AA  IS
Sbjct: 181 YNHGQAIQDVDTDGIVSSLLDAAHLIS 207


>gi|134095753|ref|YP_001100828.1| phosphoglycolate phosphatase 2
           [Herminiimonas arsenicoxydans]
          Length = 221

 Score = 89.0 bits (219), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 97/215 (45%), Gaps = 9/215 (4%)

Query: 9   AAIIDLDGTMLDTAADFHVAVNRMREELGLTPLSQETIVNFVGKGTENLIRRVLAVDYAE 68
           A + DLDGT+ DTA D   AVN++R   GL P     +      G   LI     +   +
Sbjct: 8   AILFDLDGTLADTAPDLAEAVNQLRVTRGLAPADYALLRPVASAGARGLIGVAFGITPQD 67

Query: 69  DEAAQYFQQALESYTEHYLAINGDYSSLYPGVLEGLQALRGKGLRLACVTNKPLAFAVPL 128
            E A+     L +Y    +A+N   S L+ GV E L  L+ K +    VTNK       L
Sbjct: 68  AEYAELRDNFLRNYAA-AIAVN---SRLFEGVSELLSNLQEKNIAWGIVTNKAAQLTDQL 123

Query: 129 LQKKGLRDFFEIVYGGDSFPKKKPDPMPLLQVCQDFGLEPAQVVAIGDSSNDAQAARAAG 188
           + + GL      V  GD+    KP P PL +  +  G++P     +GD   D QA +AAG
Sbjct: 124 VPQIGLH-HAACVISGDTTAHPKPHPAPLFEAAKRIGVQPEHCWYVGDDLRDIQAGQAAG 182

Query: 189 CRVLNVPYGYNHGESIHNVDSDGIVSTLVEAAQQI 223
              +   +GY    +    ++D     LVE+ QQ+
Sbjct: 183 MTTIAAAWGYCGEVAPATWNADA----LVESPQQL 213


>gi|134095275|ref|YP_001100350.1| putative phosphoglycolate
           phosphatase protein [Herminiimonas arsenicoxydans]
          Length = 219

 Score = 65.5 bits (158), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 84/187 (44%), Gaps = 7/187 (3%)

Query: 11  IIDLDGTMLDTAADFHVAVNRMREELGLTPLSQETIVNFVGKGTENLIRRVLAVDYAEDE 70
           + D DGT++D+ A     +    ++LGL    Q+   + +G   +N +   L      D 
Sbjct: 10  VFDWDGTLMDSTAVIVNCIQAAAKDLGLPIPDQKAASHVIGLSLQNAMEVAL-----PDI 64

Query: 71  AAQYFQQALESYTEHYLAINGDYSSLYPGVLEGLQALRGKGLRLACVTNKPLAFAVPLLQ 130
            A+Y+ + +E Y  HYL  +G    L+ GV E L  L  +G  LA  T K        L 
Sbjct: 65  DAKYYPRMVERYRYHYLNQDGGLV-LFDGVHEMLNDLSQQGYFLAVATGKSRVGLNRALN 123

Query: 131 KKGLRDFFEIVYGGDSFPKKKPDPMPLLQVCQDFGLEPAQVVAIGDSSNDAQAARAAGCR 190
              L   F+     D     KP P  L ++ ++ G +  + V IGD+++D   A+ AG  
Sbjct: 124 ASKLLSLFDATRCADE-TFSKPHPAMLQELTRELGQDMKRTVMIGDTTHDLLLAQNAGAS 182

Query: 191 VLNVPYG 197
            + V YG
Sbjct: 183 GIAVHYG 189


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.136    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 424,926
Number of extensions: 17042
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 3
Length of query: 226
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 148
Effective length of database: 743,337
Effective search space: 110013876
Effective search space used: 110013876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)