BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3792.p
         (221 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093490|ref|YP_001098565.1| ribulose-phosphate 3-epimerase ...   412   e-117

>gi|134093490|ref|YP_001098565.1| ribulose-phosphate 3-epimerase
           [Herminiimonas arsenicoxydans]
          Length = 221

 Score =  412 bits (1060), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 199/221 (90%), Positives = 212/221 (95%)

Query: 1   MPTYRIAPSILSADFARLGEEVRNVVAAGADFIHFDVMDNHYVPNLTIGPLVCEAIRPHV 60
           MP+YRIAPSILSADFARLGEEVRNVVAAGAD IHFDVMDNHYVPNLTIGPLVCEAIRPHV
Sbjct: 1   MPSYRIAPSILSADFARLGEEVRNVVAAGADIIHFDVMDNHYVPNLTIGPLVCEAIRPHV 60

Query: 61  QVPIDVHLMVKPVDRIIPDFAKAGANLITFHPEASEHIDRSLQLIRDNGCKAGLVFNPGT 120
           QVPIDVHLMVKPVDRI+PDFAKAGAN+ITFHPEASEH+DR+LQLIRDNGCKAGLVFNP T
Sbjct: 61  QVPIDVHLMVKPVDRIVPDFAKAGANIITFHPEASEHVDRTLQLIRDNGCKAGLVFNPAT 120

Query: 121 PLHYLDHVMDKLDMVLIMSVNPGFGGQSFIPEALKKIAEVRRRIDASGRDILLEVDGGIK 180
           PLHYL+HVMDKLD++L+MSVNPGFGGQSFIP  LKKIA VR+ ID SGRDI+LEVDGGIK
Sbjct: 121 PLHYLEHVMDKLDIILLMSVNPGFGGQSFIPHTLKKIAAVRKLIDESGRDIMLEVDGGIK 180

Query: 181 VENIAAAARAGADTFVAGSAIFGKPDYKAVIDAMRAELAQV 221
           V+NI AAARAGADTFVAGSAIFGKPDYKAVIDAMR ELA+V
Sbjct: 181 VDNIEAAARAGADTFVAGSAIFGKPDYKAVIDAMRNELAKV 221


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.141    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 445,332
Number of extensions: 19095
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 221
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 143
Effective length of database: 743,337
Effective search space: 106297191
Effective search space used: 106297191
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)