BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3789.p
         (405 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093493|ref|YP_001098568.1| membrane-bound lytic murein tra...   515   e-147

>gi|134093493|ref|YP_001098568.1| membrane-bound lytic murein
           transglycosylase [Herminiimonas arsenicoxydans]
          Length = 418

 Score =  515 bits (1326), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 249/395 (63%), Positives = 307/395 (77%), Gaps = 17/395 (4%)

Query: 20  LAVSVAVLLAACQTTPLTTPA----------PGQPGPRPVVQPG-------PAMRATTFS 62
           L  S+ + L +C TTP   PA          P +P P P   PG        A+R  TF+
Sbjct: 24  LLASILLGLVSCSTTPRQPPAAPSEPAVPVAPARPVPSPAELPGLPRTEINSALRPVTFA 83

Query: 63  QLPGWTNDDLREAWPAVQSSCSVMIRKPEWRAACSAAQQVNANDLGFLRQYFETYFTPYQ 122
            LPGW +DD REA PA  +SC+V+IR+P+W+ AC+A   V+ +D    R++FE YF PY+
Sbjct: 84  VLPGWKSDDQREALPAFLASCAVLIRRPDWKGACAAGANVDVSDDDAARKFFENYFVPYR 143

Query: 123 LFNPDGTDTGLVTGYYEPLLRGSRRRGGPYQTPLYQAPEDLLTIDLASAYPELKNLRLRG 182
           + NPDG+ +G VTGYYEPLL+G+R+RGG YQTPL+ AP+D+LTI+LAS +PELK  R+RG
Sbjct: 144 VANPDGSLSGTVTGYYEPLLQGARKRGGRYQTPLHGAPDDILTIELASVFPELKGQRVRG 203

Query: 183 KLVGRKVVPYPTRAELMQGNTLAGKEIVWVDDPVEAFFLQVQGSGRVYLPESRETIRLAY 242
           +LVG KVV YP+RAEL + N LAGKEI+WVDD ++AFFLQVQGSGRV L + +E +RLAY
Sbjct: 204 RLVGNKVVAYPSRAELNKSNALAGKEILWVDDAIDAFFLQVQGSGRVQLDDGKEIVRLAY 263

Query: 243 ADQNGRPYKSIGRYLVDKGEMELSQASAQNIKAWVQANPARKEELLNANPSYVFFKEEKL 302
           ADQNG+PYKSIGRYL+DKGE+ L QASAQ IKAWV+ANP R++ELLNANPSYVFF+EEK+
Sbjct: 264 ADQNGQPYKSIGRYLIDKGELTLDQASAQGIKAWVRANPKRQQELLNANPSYVFFREEKV 323

Query: 303 LDPSKGPKGAQGIPLTPQRSIAIDPQHVPLGAPVFLSTTMPNSERPLQRLVVAQDTGGAI 362
            DP+ GPKGA G+PLTPQRSIA+DPQ++PLGAPVFLSTT PNS   LQRLV+AQDTG AI
Sbjct: 324 TDPNVGPKGALGVPLTPQRSIAVDPQYIPLGAPVFLSTTQPNSNVALQRLVLAQDTGSAI 383

Query: 363 RGVVRADYFWGFGDEAEDRAGSMKQRGMMWVLLPK 397
           +  VRADYFWGFG +A ++AG MKQRG MWVLLPK
Sbjct: 384 KNAVRADYFWGFGAQAGEQAGRMKQRGAMWVLLPK 418


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 744,532
Number of extensions: 30969
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 321
Effective length of database: 723,567
Effective search space: 232265007
Effective search space used: 232265007
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)