BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3788.p (145 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093667|ref|YP_001098742.1| hypothetical protein HEAR0391 [... 154 2e-39 gi|134094791|ref|YP_001099866.1| universal stress protein [Hermi... 133 5e-33 gi|134095516|ref|YP_001100591.1| universal stress family protein... 132 8e-33 gi|134096496|ref|YP_001101571.1| universal stress family protein... 131 1e-32 gi|134095525|ref|YP_001100600.1| universal stress family protein... 118 1e-28 >gi|134093667|ref|YP_001098742.1| hypothetical protein HEAR0391 [Herminiimonas arsenicoxydans] Length = 147 Score = 154 bits (388), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 75/147 (51%), Positives = 99/147 (67%), Gaps = 2/147 (1%) Query: 1 MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESS--MAIDPAL 58 MFK ILVPTDGS SDKAI A+++AK L+ + VAEPY +S L E + +D Sbjct: 1 MFKKILVPTDGSPLSDKAITAAIEFAKTVNGELVTLCVAEPYVYSALVEGAGVFPMDSVA 60 Query: 59 YEENVKTLANQYIKKITDAAAAAGVPCQAEVVMSFNPDEEIIKAAQFHSCDAIFMASHGR 118 Y+E + +A + K A A GV C+ V +SF+P EEI++ A+ +CD IFMASHGR Sbjct: 61 YDEKAQEIAQHNVDKAAALARAQGVTCKTAVALSFSPYEEIVRTAEASACDVIFMASHGR 120 Query: 119 SGLSRIFLGSKTQKVLTHSTIPVLVLR 145 GL+++F+GS+TQKVL HSTIPVLV R Sbjct: 121 KGLNKLFVGSETQKVLAHSTIPVLVFR 147 >gi|134094791|ref|YP_001099866.1| universal stress protein [Herminiimonas arsenicoxydans] Length = 143 Score = 133 bits (334), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 65/145 (44%), Positives = 92/145 (63%), Gaps = 2/145 (1%) Query: 1 MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESSMAIDPALYE 60 MFK IL+ TDGSE SDKA+ A+ +AK G++++G++VA YP+ P+ M + Sbjct: 1 MFKKILLATDGSELSDKAVQAALQFAKEHGSKIVGLSVATIYPYFPV--YGMEATSGEFA 58 Query: 61 ENVKTLANQYIKKITDAAAAAGVPCQAEVVMSFNPDEEIIKAAQFHSCDAIFMASHGRSG 120 + + A +Y+ KI AA+ GV + VV + +EIIKAA + CDAIFMASHGR G Sbjct: 59 QAISKEAEKYVHKIATHAASLGVDAEVHVVEGTSASDEIIKAADKYHCDAIFMASHGRKG 118 Query: 121 LSRIFLGSKTQKVLTHSTIPVLVLR 145 L + LGS+ QKVL HS +PV + + Sbjct: 119 LDKFLLGSEAQKVLVHSKLPVTIFK 143 >gi|134095516|ref|YP_001100591.1| universal stress family protein [Herminiimonas arsenicoxydans] Length = 140 Score = 132 bits (331), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 68/145 (46%), Positives = 94/145 (64%), Gaps = 5/145 (3%) Query: 1 MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESSMAIDPALYE 60 M KTIL+ TDGS+ S KA+ A+D+A + G++++G++VAE +P E + D E Sbjct: 1 MLKTILLATDGSDLSKKAVTAAIDFAASYGSKIVGLSVAEVFP-----ELFLDYDLRAIE 55 Query: 61 ENVKTLANQYIKKITDAAAAAGVPCQAEVVMSFNPDEEIIKAAQFHSCDAIFMASHGRSG 120 E+++ A + + A AGV C+ V +P +EIIKAA CDAIFMASHG+ G Sbjct: 56 EDMQKRAVSDANFVEECAKKAGVACEVHTVTGVHPYQEIIKAANDFHCDAIFMASHGKKG 115 Query: 121 LSRIFLGSKTQKVLTHSTIPVLVLR 145 + +I LGS+TQKVL HSTIPVLV R Sbjct: 116 IDKILLGSETQKVLAHSTIPVLVYR 140 >gi|134096496|ref|YP_001101571.1| universal stress family protein [Herminiimonas arsenicoxydans] Length = 135 Score = 131 bits (330), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 67/145 (46%), Positives = 94/145 (64%), Gaps = 10/145 (6%) Query: 1 MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESSMAIDPALYE 60 MFK I++P+DGS+ S+KAI V +AK +G+ ++G++V + YP+ P A A E Sbjct: 1 MFKKIMLPSDGSDLSNKAIEKTVQFAKENGSTVVGLSVEQIYPYFPYANLPGA------E 54 Query: 61 ENVKTLANQYIKKITDAAAAAGVPCQAEVVMSFNPDEEIIKAAQFHSCDAIFMASHGRSG 120 E A Q KK+ D A AGVP + V +P EEI+KAA+ +CD++FM+SHG G Sbjct: 55 ER----AAQNAKKVADIAGKAGVPFETHAVKGKSPHEEILKAAELFNCDSVFMSSHGEKG 110 Query: 121 LSRIFLGSKTQKVLTHSTIPVLVLR 145 L R+ LGS TQKVL HS +PV+VL+ Sbjct: 111 LDRLLLGSVTQKVLLHSPLPVVVLK 135 >gi|134095525|ref|YP_001100600.1| universal stress family protein [Herminiimonas arsenicoxydans] Length = 143 Score = 118 bits (296), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 59/145 (40%), Positives = 93/145 (64%), Gaps = 2/145 (1%) Query: 1 MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESSMAIDPALYE 60 MFK IL+ TDGS+ SDKA+ + +AK G++++G++VA YP+ P+ M + Sbjct: 1 MFKKILLATDGSKLSDKAVQATLQFAKEHGSKIVGLSVATIYPYLPV--PGMEAISGEFV 58 Query: 61 ENVKTLANQYIKKITDAAAAAGVPCQAEVVMSFNPDEEIIKAAQFHSCDAIFMASHGRSG 120 + + A + ++KI+ AA+ GV + V + EEIIK A + CD+IFMASHGR+G Sbjct: 59 DAITNQAEKNVEKISALAASLGVDAEVHVAEGSSACEEIIKTAAKYHCDSIFMASHGRTG 118 Query: 121 LSRIFLGSKTQKVLTHSTIPVLVLR 145 L ++ LGS+ QKVL +S +PV +++ Sbjct: 119 LDKLMLGSEAQKVLAYSKLPVTIIK 143 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.130 0.364 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 250,557 Number of extensions: 8492 Number of successful extensions: 53 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 47 Number of HSP's successfully gapped: 6 Length of query: 145 Length of database: 1,000,347 Length adjustment: 73 Effective length of query: 72 Effective length of database: 759,812 Effective search space: 54706464 Effective search space used: 54706464 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 124 (52.4 bits)