BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3787.p
         (258 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093495|ref|YP_001098570.1| enoyl-CoA hydratase [Herminiimo...   416   e-118
gi|134095152|ref|YP_001100227.1| putative enoyl-CoA hydratase/is...   100   1e-22
gi|134095889|ref|YP_001100964.1| enoyl-CoA hydratase [Herminiimo...    78   6e-16

>gi|134093495|ref|YP_001098570.1| enoyl-CoA hydratase [Herminiimonas
           arsenicoxydans]
          Length = 258

 Score =  416 bits (1068), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 197/257 (76%), Positives = 224/257 (87%)

Query: 1   MSYENILVETHDKVGLIRLNRPKALNALNDALMIELGQALLAFDAQDEIGCIIVTGSEKA 60
           M YENIL+E H KVGLI LNRP ALNALND LM ELG+ALL+FDA ++IGC+I+TGSEKA
Sbjct: 1   MQYENILIEIHGKVGLITLNRPAALNALNDKLMDELGKALLSFDANEDIGCMIITGSEKA 60

Query: 61  FAAGADISVMAGYDYMDVFNGEFITRNWETLRRIRKPVIAAVAGYALGGGCELAMMCDFI 120
           FAAGADI  MA Y YMDV+ G++ITRNWE +R +RKPVIAAVAGYALGGGCELAMMCDFI
Sbjct: 61  FAAGADIGAMATYSYMDVYKGDYITRNWEQIRSVRKPVIAAVAGYALGGGCELAMMCDFI 120

Query: 121 IAADNAKFGQPEIKLGIIPGAGGTQRLPRAVSKAKAMDLALTARMMDAQEAERAGLVSRV 180
           IAAD AKFGQPEIKLGIIPGAGGTQRLPR+VSK+KAMD+ LTARMMDA EAERAGLVSRV
Sbjct: 121 IAADTAKFGQPEIKLGIIPGAGGTQRLPRSVSKSKAMDMCLTARMMDAAEAERAGLVSRV 180

Query: 181 VPADKLMEEAMAAAVTITEMPRQVAMMVKDSVNRAYESTLTEGIKYERALFYSCFATEDQ 240
           V ADKL EEA+AAA  I  M   + MM+K+S+NRAYE+TL EG+++ER LF+S FATEDQ
Sbjct: 181 VAADKLQEEALAAATVIASMSLPMVMMIKESINRAYETTLAEGVQFERRLFHSTFATEDQ 240

Query: 241 KEGMKAFLEKRPAVFKN 257
           KEGM+AF+EKR A FKN
Sbjct: 241 KEGMRAFVEKRAAKFKN 257


>gi|134095152|ref|YP_001100227.1| putative enoyl-CoA
           hydratase/isomerase family protein [Herminiimonas
           arsenicoxydans]
          Length = 301

 Score =  100 bits (248), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/260 (28%), Positives = 122/260 (46%), Gaps = 5/260 (1%)

Query: 1   MSYENILVETHDKVGLIRLNRPKALNALNDALMIELGQALLAFDAQDEIGCIIVTGSEKA 60
           MS E I    H+   ++ L+ P A NAL+  +     +        D I  +I+TG++  
Sbjct: 43  MSAE-IRASRHEATLILTLSNPGAKNALHPDMFAAAIETFSTAARDDSIRAVILTGADNF 101

Query: 61  FAAGADISVMA---GYDYMDVFNGEFITRNW-ETLRRIRKPVIAAVAGYALGGGCELAMM 116
           F AG +++ +      D  D  +     R W E +R   KPVIAAV   A G G  LA+ 
Sbjct: 102 FCAGGNLNTLLELRAQDRADQADAVDSLRGWIEAIRDCPKPVIAAVESAAAGAGFSLALA 161

Query: 117 CDFIIAADNAKFGQPEIKLGIIPGAGGTQRLPRAVSKAKAMDLALTARMMDAQEAERAGL 176
           CD I+A  NAKF    + +G+ P  G +  L +A+ +  A ++ L  + + AQ     G+
Sbjct: 162 CDLIVAGANAKFAMSYVNIGLTPDGGASWFLSQALPRQLATEIMLEGKPVPAQRLHDLGV 221

Query: 177 VSRVVPADKLMEEAMAAAVTITEMPRQVAMMVKDSVNRAYESTLTEGIKYERALFYSCFA 236
           ++R+V     ++ ++  A  +  +       +K     A + +L +  + E+  F     
Sbjct: 222 INRIVADGATLQTSLDWADELAALSGHAVERIKSLTREARDHSLPQHFEIEKNHFVDSLN 281

Query: 237 TEDQKEGMKAFLEKRPAVFK 256
             D +EG+ AFLEKR   +K
Sbjct: 282 HRDAQEGIHAFLEKRAPHYK 301


>gi|134095889|ref|YP_001100964.1| enoyl-CoA hydratase [Herminiimonas
           arsenicoxydans]
          Length = 264

 Score = 77.8 bits (190), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 111/252 (44%), Gaps = 19/252 (7%)

Query: 11  HDKVGLIRLNRPKALNALNDALMIELGQALLAFDAQDEIGCIIVTGSE-KAFAAGADISV 69
            D +  I  +RP+A NA+  A+  ELG       A   I      G+  +AF AG DI  
Sbjct: 17  QDGIAAILFDRPQARNAMTWAMYTELGAICERIRADQSIRVTTFRGAGGEAFVAGTDIE- 75

Query: 70  MAGYDYMDVFNGE-------FITRNWETLRRIRKPVIAAVAGYALGGGCELAMMCDFIIA 122
                + +  +GE        +      +  +  P +A V G+A+GGG  +A  CDF IA
Sbjct: 76  ----QFRNFSSGEDGIAYERIVDERIGQIEALPMPTLAIVDGWAIGGGLAIAAACDFRIA 131

Query: 123 ADNAKFGQPEIK-LGIIPGAGGTQRLPRAVSKAKAMDLALTARMMDAQEAERAGLVSRVV 181
              ++FG P  + LG         R+  A    +A  + L A ++ A E   AG V+ VV
Sbjct: 132 TPASRFGIPIARTLGNCLSMANIARVVAAFGVGRAKRILLLAEVLAADELLAAGFVTEVV 191

Query: 182 PADKLMEEAMAAAVTITEMPRQVAMMVKDSVNRAYESTLTEGIKYERALFYSCFATEDQK 241
            A  L   A A    +         + K+++ R  ++ L +G      L  +C+ + D K
Sbjct: 192 EAAVLDATADALCKKLASNAPITMGVSKEAIRRLTQAGLPDG----EDLIRACYGSSDFK 247

Query: 242 EGMKAFLEK-RP 252
            G+ AFLEK RP
Sbjct: 248 IGVHAFLEKQRP 259


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 460,942
Number of extensions: 18307
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 5
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 5
Length of query: 258
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 178
Effective length of database: 736,747
Effective search space: 131140966
Effective search space used: 131140966
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)