BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3784.p (254 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrog... 134 3e-33 gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 120 5e-29 gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein... 102 2e-23 gi|134093825|ref|YP_001098900.1| oxidoreductase [Herminiimonas a... 91 7e-20 gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding s... 89 2e-19 >gi|134095010|ref|YP_001100085.1| D-beta-hydroxybutyrate dehydrogenase [Herminiimonas arsenicoxydans] Length = 264 Score = 134 bits (338), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 90/258 (34%), Positives = 138/258 (53%), Gaps = 13/258 (5%) Query: 8 LAGKTVLITAAAQGIGRAATELFAREGARVIATDISRPH-LDAL-AGLA---GVET--RI 60 L GKT LIT + GIG A++GA ++ + + AL AGL GV++ Sbjct: 6 LQGKTALITGSTSGIGLGIARALAQQGAHIVLNGFGDANEIAALQAGLTQDYGVQSTYHP 65 Query: 61 LDVTDDAAIKALV----AEIGTVDVLFNCAGYVAAGNILECDDKAWDFSFNLNAKAMFHT 116 D++ I A++ A+ G+VD+L N AG +I + + WD +N + FHT Sbjct: 66 ADMSRPQEIAAMMQFAAAKFGSVDILVNNAGIQHVADIEDFPVEKWDAIIAINLSSAFHT 125 Query: 117 IRAVLPGMLAKKAGSIVNIASAASSVKGVANRFAYGASKAAVVGLTKSVAADFVAQGIRC 176 R LP M K G I+NIASA V G A + AY A+K +VGL+K A + G+ C Sbjct: 126 TRLALPAMKEKNWGRIINIASAHGLV-GSAQKSAYVAAKHGIVGLSKVTALENAQTGVTC 184 Query: 177 NAICPGTIESPSLNQRIATQAKETGKSEDEVRAAFVA-RQPMGRIGKAEEVAALALYLAS 235 NAICPG + +P + +++ +A S D+ + +A +QP G E++ ALA++L S Sbjct: 185 NAICPGWVLTPLVQKQVDVRAANEDVSNDDAKKGLLAEKQPSGEFVTPEQLGALAVFLCS 244 Query: 236 DESNFTTGSVHMIDGGWS 253 + +N G+ +DGGW+ Sbjct: 245 EAANQVRGAAWSMDGGWT 262 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 120 bits (302), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 136/254 (53%), Gaps = 18/254 (7%) Query: 4 STGRLAGKTVLITAAAQGIGRAATELFAREGARVIATDISRPHLDALAGLAGVETR--IL 61 +T LAG+ L+T A++GIGRA + A++G +VI T S A++ + +L Sbjct: 2 TTVELAGQVALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGVVL 61 Query: 62 DVTDDAAIKALVAEI----GTVDVLFNCAGYVAAGNILECDDKAWDFSFNLNAKAMFHTI 117 DV D A AL+ EI GTV +L N AG + D+ WD N ++ Sbjct: 62 DVNDAARSVALIDEIQKEFGTVTILVNNAGITQDQLAMRMKDEEWDSVIATNLTSVGRLS 121 Query: 118 RAVLPGMLAKKAGSIVNIASAASSVKGVANRFAYGASKAAVVGLTKSVAADFVAQGIRCN 177 RAVL GM+ K G I+NI S S G A + Y A+KA V G+++++A + ++ I N Sbjct: 122 RAVLRGMMKAKHGRIINITSVVGST-GNAGQMNYAAAKAGVAGMSRALAREIGSRNITVN 180 Query: 178 AICPGTIESPSLNQRIATQAKETGKSEDEVRAAFVARQPMGRIGKAEEVAALALYLASDE 237 + PG I+ T +T SE ++ +A + + P+GR+G E++AA +LAS + Sbjct: 181 CVAPGFID---------TDMTKT-LSEQQI-SALLQQVPLGRLGVPEDIAAAVSFLASPQ 229 Query: 238 SNFTTGSVHMIDGG 251 +++ TG+ ++GG Sbjct: 230 ASYITGTTLHVNGG 243 >gi|134093831|ref|YP_001098906.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 246 Score = 102 bits (254), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 120/248 (48%), Gaps = 21/248 (8%) Query: 14 LITAAAQGIGRAATELFAREGARVIAT----DISRPHLDALAGLAGVETRIL--DVTDDA 67 L+T G+G A A G +V+ T + + A +G + R DV+D Sbjct: 6 LVTGGMGGLGEAICIKLAALGYQVVTTYSPSNTTAGEWLATMKASGYDFRAYPCDVSDYD 65 Query: 68 AIKALVA----EIGTVDVLFNCAGYVAAGNILECDDKAWDFSFNLNAKAMFHTIRAVLPG 123 + + VA EIG +DVL N AG + + WD N ++F+ + V G Sbjct: 66 SAQQCVALIKKEIGEIDVLVNNAGITRDMTFKKMEKTDWDAVMGTNLDSVFNMTKPVCDG 125 Query: 124 MLAKKAGSIVNIASAASSVKGVANRFAYGASKAAVVGLTKSVAADFVAQGIRCNAICPGT 183 M+ + G I+NI+S ++ KG + Y A+KA + G TK++A + + + N I PG Sbjct: 126 MVERGWGRIINISSV-NAQKGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTISPGY 184 Query: 184 IESPSLNQRIATQAKETGKSEDEVRAAFVARQPMGRIGKAEEVAALALYLASDESNFTTG 243 I + + T +D + V + PMGR+GK EEVA L YLASDE+ F TG Sbjct: 185 IGTKMV----------TAIPQDVLDTKIVPQIPMGRLGKPEEVAGLVAYLASDEAAFVTG 234 Query: 244 SVHMIDGG 251 + I+GG Sbjct: 235 ANIAINGG 242 >gi|134093825|ref|YP_001098900.1| oxidoreductase [Herminiimonas arsenicoxydans] Length = 259 Score = 90.5 bits (223), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 73/256 (28%), Positives = 116/256 (45%), Gaps = 19/256 (7%) Query: 8 LAGKTVLITAAAQGIGRAATELFAREGARVIATDISR-------PHLDALAGLAGVETRI 60 + GKT L+ A++G+GR E A EG V T ++R +D + +GV T + Sbjct: 5 IKGKTALVCGASRGLGRGCAEALAAEGVHV--TLVARNLEVLEATAMDIRSSASGVITIV 62 Query: 61 -LDVTDDAAIKALVAEIGTVDVLFNCAGYVAAGNILECDDKAWDFSFNLNAKAMFHTIRA 119 D+T + D+L AG G+ + W + + N I+A Sbjct: 63 ACDITTAEGRAQALHICPQPDILVTNAGGPPTGDFHDWTRDDWIAALDANMLTPIELIKA 122 Query: 120 VLPGMLAKKAGSIVNIASAAS----SVKGVANRFAYGASKAAVVGLTKSVAADFVAQGIR 175 + GM+A+ G I+NI S+A SV G++N +++ + G +A VAQ + Sbjct: 123 TVDGMMARGFGRIINITSSAVKAPISVLGLSN-----GARSGLTGFVAGLARKTVAQNVT 177 Query: 176 CNAICPGTIESPSLNQRIATQAKETGKSEDEVRAAFVARQPMGRIGKAEEVAALALYLAS 235 N + PG E+ L+ + AK GKS DE+ A P R G +E A +L S Sbjct: 178 INNLLPGPFETDRLHSIFSEAAKSGGKSVDEISAVRKLSNPARRFGTRQEFGATCAFLCS 237 Query: 236 DESNFTTGSVHMIDGG 251 + + TG ++DGG Sbjct: 238 QHAGYITGQNILLDGG 253 >gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding subunit [Herminiimonas arsenicoxydans] Length = 248 Score = 89.0 bits (219), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 67/179 (37%), Positives = 89/179 (49%), Gaps = 12/179 (6%) Query: 13 VLITAAAQGIGRAATELFAREGARVIATDISRPHLDALAGLAG--VETRILDVTDD---- 66 VLIT A+ G G FA++G +VIAT + LD LA G V T +DVTD Sbjct: 3 VLITGASSGFGAEMARKFAQQGHKVIATGRRKDRLDDLAAELGAAVLTVAMDVTDKHSIT 62 Query: 67 AAIKALVAEIGTVDVLFNCAGY---VAAGNILECDDKAWDFSFNLNAKAMFHTIRAVLPG 123 AA+ +L AE +DVL N AG VA + W+ N K + R VLP Sbjct: 63 AALDSLPAEWREIDVLINNAGLALGVAPAQTASLEQ--WETMIETNCKGLVTVTRLVLPD 120 Query: 124 MLAKKAGSIVNIASAASSVKGVANRFAYGASKAAVVGLTKSVAADFVAQGIRCNAICPG 182 ML + G+I+NI S+A + YGA+KA V T ++ AD V G+R + PG Sbjct: 121 MLKRNRGTIINIGSSAGAY-AYPGANVYGATKAFVAQFTLNLRADLVGTGVRATNLAPG 178 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.318 0.130 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 420,699 Number of extensions: 14947 Number of successful extensions: 104 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 83 Number of HSP's successfully gapped: 12 Length of query: 254 Length of database: 1,000,347 Length adjustment: 80 Effective length of query: 174 Effective length of database: 736,747 Effective search space: 128193978 Effective search space used: 128193978 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)