BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3782.p
         (511 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096487|ref|YP_001101562.1| putative D-galactarate dehydrat...   164   1e-41

>gi|134096487|ref|YP_001101562.1| putative D-galactarate
           dehydratase/Altronate hydrolase, C-terminal
           [Herminiimonas arsenicoxydans]
          Length = 389

 Score =  164 bits (414), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/406 (30%), Positives = 200/406 (49%), Gaps = 30/406 (7%)

Query: 103 FVAEPATFMGIVRPDGRVATRNYIGVLTSVNCSATAARAIADYFRRDIHPEVLAAYPNID 162
            + + +TF+G  R +GRV  RN++ +L   + S  A  A+A+               NI 
Sbjct: 1   MITKDSTFLGYRRENGRVGVRNHVIILPLDDLSNAACEAVAN---------------NIK 45

Query: 163 GVVALTHGQGCATDSQGEPLQILRRTLAGYATHPNFAAVLVVGLGCETNQ--ISGLMESH 220
           G +A+ H  G      G  L +  RTL G  ++PN AAV+V+G+     +  + G+  + 
Sbjct: 46  GTMAIPHPYGRL--QFGADLDLHFRTLIGTGSNPNVAAVVVIGIEDSWTKKIVDGIAAT- 102

Query: 221 NLKEGEYFHTFTIQGTGGTAKTVALGIEKIKKMLPKANDIQRQPVSAKHLTLGLQCGGSD 280
               G+    F I+G G   +T+    +K ++ +  A++ +R+    K L +  +CG SD
Sbjct: 103 ----GKPVVGFGIEGHG-DHETIMNASKKAREFMQWASEKKREECHIKELWVSTKCGESD 157

Query: 281 GYSGITANPALGAAVDLLVRHGGTAILSETPEIYGAEHLLTRRAVSPEVGQKLLARIAWW 340
             SG  ANP +GAA D L   G T +  ET EI G E +L  R  + EV ++ +     +
Sbjct: 158 TTSGCGANPTVGAAFDKLHALGSTLVFGETSEITGGESILAARCANDEVRKQFMFMFDRY 217

Query: 341 EGYCAKNDAE--MNNNPSAGNKAGGLTTILEKSLGAVAKGGTTNLVD-VYQYAETVTARG 397
           +    ++      ++ P+ GN AGGLTTI EK++G + K G    VD V   AE  T  G
Sbjct: 218 QDMINRHKTSDLSDSQPTKGNIAGGLTTIEEKAMGNIQKIGKKCTVDGVIDKAEMPTHSG 277

Query: 398 FVFMDTPGYDPISATGQVAGGANVICFTTGRGSAYGCAPAPSLKLATNTALWQRQEEDMD 457
             FMD+        T   A G  V  F TG+G+  G    P +K+  N    +   E +D
Sbjct: 278 LWFMDSSSAAAEMVTLCAASGFVVHFFPTGQGNVIGNPILPVIKICANPRTVRLMSEHID 337

Query: 458 INCGEIADGDVTPQEIGERFFQMILDTASGKKTKSELHGYGQDEFV 503
           ++C  +   ++T ++ G++  +M++ TA+G+ T +E+   G  EFV
Sbjct: 338 LDCSGLLQRELTLEQTGDKLLEMMISTANGRLTDAEV--LGHREFV 381


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,069,718
Number of extensions: 47466
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 425
Effective length of database: 716,977
Effective search space: 304715225
Effective search space used: 304715225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)