BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3781.p
         (268 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093508|ref|YP_001098583.1| glutamate/aspartate periplasmic...    70   1e-13

>gi|134093508|ref|YP_001098583.1| glutamate/aspartate periplasmic
           binding protein ABC transporter [Herminiimonas
           arsenicoxydans]
          Length = 300

 Score = 69.7 bits (169), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 16/259 (6%)

Query: 18  LACLAQAAQADALA----DIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVE-------T 66
           ++ L  AAQA  L+     IK   ++ +     + PF   + K +P G  ++       T
Sbjct: 16  MSTLMTAAQAQELSGTLKKIKETGEITIGYRESSIPFSFLDDKQQPIGYAMDLCMKIVGT 75

Query: 67  ARLLAKDLGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFV 126
            +   K   +++++  VT  NRIP L  G  D+   S + +  RQ+ VAF   Y      
Sbjct: 76  VKADLKLPALKVKLQPVTSSNRIPLLNNGTIDLECGSTTNSIARQEQVAFGPTYFVINVT 135

Query: 127 VAAPKTENIKSINDLVGKRVAVVRGNMQDSLLTPIAPKGTNIVR--FDDDATVTAAILSG 184
            A  K+ NI +I  L GK V+   G     LL      G   V+  +  D      +++ 
Sbjct: 136 AAVKKSSNINTIAQLDGKTVSTTSGTTSVPLLKAYKKAGNAQVKEIYGKDHAEAFLLMAD 195

Query: 185 QVDALCTPNSLASAIAKQNPSKNLETKF---AIKDIPYAIGLRKGEPALEKWLNEWITAN 241
              A    + +  A    N  +  + K    +++  PY++ LRKG+P  +  +++ ITA 
Sbjct: 196 DRAAAFVMDDILLAGQIANAKRPGDYKILPESLRQEPYSMMLRKGDPQFKALVDKSITAV 255

Query: 242 LKNGKLPAIYQQWVGSPMP 260
           +++G++  IY +W  +P+P
Sbjct: 256 MQSGEIDKIYAKWFTTPIP 274


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 466,596
Number of extensions: 18119
Number of successful extensions: 67
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 188
Effective length of database: 736,747
Effective search space: 138508436
Effective search space used: 138508436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)