BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3780.p (244 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 223 9e-60 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 159 1e-40 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 152 2e-38 gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding pr... 148 2e-37 gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding pro... 140 4e-35 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 223 bits (567), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 116/238 (48%), Positives = 159/238 (66%), Gaps = 1/238 (0%) Query: 4 IVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIHV 63 ++++K++ K +GS +VLN + V +G +V + G SGSGKSTL++ +NGLE G I V Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 64 CGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAHK 123 G + P K NL LR ++G+VFQ++ LFPHL++ N+TL + S +EA + K Sbjct: 61 DGISVGDP-KTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLK 119 Query: 124 VLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKVM 183 L VGL +K+ +P QLSGGQ QRVAIAR+LAM P MLFDE TSALDPE+ EVL VM Sbjct: 120 YLDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVM 179 Query: 184 EDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFVA 241 LA+ GMTM++VTHEM FARK+A+ ++FM QG + E DE F R+ + F+A Sbjct: 180 VGLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRARDFLA 237 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 159 bits (402), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/243 (37%), Positives = 147/243 (60%), Gaps = 11/243 (4%) Query: 5 VKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIHVC 64 +++K+++K FG+ LN VSLE G++ A++G SG GK+TLLR + GLE+ D G + + Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 65 GHDIHHPDKLNLRELR-KQVGIVFQSYNLFPHLTVERNITLAL---TTIKKMSTDEAKQI 120 G D + R +R +QVG VFQ Y LF H+TV NI L + S K+ Sbjct: 63 GEDA------SARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEK 116 Query: 121 AHKVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVL 180 K+L+LV L+ + YP QLSGGQ QR+A+AR+LA+ P ++L DE ALD ++ E+ Sbjct: 117 VTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELR 176 Query: 181 KVMEDLARG-GMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKF 239 + + L +T + VTH+ A ++AD +V M++G V ++G P ++++NP + + F Sbjct: 177 RWLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGF 236 Query: 240 VAS 242 + + Sbjct: 237 LGN 239 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 152 bits (383), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 87/241 (36%), Positives = 141/241 (58%), Gaps = 7/241 (2%) Query: 3 AIVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGDIH 62 A+++I++L + FG N V++ +SL ++ G+ ++G SG GK+TLLR + G ++ DAG I Sbjct: 2 ALLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKIL 61 Query: 63 VCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQIAH 122 + G D+ + ++ V VFQ+Y LFPH+TV NI L + E KQ Sbjct: 62 LDGVDLT-----GVPPEQRVVRTVFQNYALFPHMTVAGNIAFPL-EMANTPKSEIKQKVD 115 Query: 123 KVLQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPELTAEVLKV 182 + L+ V L YP +LSGGQ QRV+IAR+L P+L+L DE SALD +L ++ Sbjct: 116 EALEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIE 175 Query: 183 MEDLARG-GMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTAELQKFVA 241 + +L + G+T V VTH+ A A L+ + M++G + ++ P ++S PR+ + F+ Sbjct: 176 LINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIG 235 Query: 242 S 242 + Sbjct: 236 T 236 >gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding protein [Herminiimonas arsenicoxydans] Length = 281 Score = 148 bits (374), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 147/247 (59%), Gaps = 12/247 (4%) Query: 4 IVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEK-VDA---- 58 ++++KDL+ +G + L ++L V +GQ++A IG SG GKSTLLRC N + VD+ Sbjct: 34 VLQVKDLNLFYGKTQALFDINLNVPRGQVLAFIGPSGCGKSTLLRCFNRMNDLVDSCRVE 93 Query: 59 GDIHVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAK 118 G++ V G +++ +N+ ELR++VG+VFQ N FP T+ N+ L + + + Sbjct: 94 GEVIVDGRNVYE-RSVNVAELRRRVGMVFQKPNPFPK-TIYENVAYGLRLLGVKNRAQLD 151 Query: 119 QIAHKVLQLVGL----ENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDPE 174 ++ + L+ L +++ + LSGGQ QR+ IAR++A+ PE++L DE SALDP Sbjct: 152 EVVERSLRQAALWDEVKDRLHSSGLSLSGGQQQRLVIARAIALEPEVLLLDEPCSALDPI 211 Query: 175 LTAEVLKVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSNPRTA 234 TA++ +++DL + T+V+VTH M A +++D FM G++ E D++F+ P Sbjct: 212 ATAKIEDLLDDL-KQKYTIVIVTHNMQQAARVSDFTGFMFMGKLVEFSVTDQMFTQPTNK 270 Query: 235 ELQKFVA 241 + ++ Sbjct: 271 QTMDYIT 277 >gi|134096235|ref|YP_001101310.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 267 Score = 140 bits (354), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 78/237 (32%), Positives = 145/237 (61%), Gaps = 13/237 (5%) Query: 1 MSAIVKIKDLHKSFGSNKVLNGVSLEVQQGQMVAIIGKSGSGKSTLLRCLNGLEKVDAGD 60 M +V+I++LH ++G +L+ ++++ +G+++A++G SGSGK+T+LR + G AG+ Sbjct: 1 MPNLVEIRNLHFAYGERPILSELTMDFPRGKVIAVMGGSGSGKTTVLRLIGGQLLPQAGN 60 Query: 61 IHVCGHDIHHPDKLNLRELRKQVGIVFQSYNLFPHLTVERNITLALTTIKKMSTDEAKQI 120 + V G + D L +R+++G++FQ LF ++V N+ L + TD +Q+ Sbjct: 61 VVVDGQVVSEMDTKALYRMRRKMGMLFQHGALFTDMSVFDNVAFPL----REHTDLPEQL 116 Query: 121 AHKV----LQLVGLENKKEAYPEQLSGGQAQRVAIARSLAMAPELMLFDEVTSALDP--- 173 H + LQ VGL N + P ++SGG A+RVA+AR++A+ P+L+++DE + LDP Sbjct: 117 IHDLVLMKLQAVGLRNAAQLKPAEISGGMARRVALARAIALDPQLIMYDEPFAGLDPISM 176 Query: 174 ELTAEVLKVMEDLARGGMTMVLVTHEMAFARKLADVLVFMHQGQVWEMGPPDELFSN 230 +TA +++ + D G T +LV+H++ + +AD + F+ G+V G P E+ ++ Sbjct: 177 GMTANLIRKLNDAL--GSTTILVSHDVHESFLIADYVYFLSNGKVVAQGTPAEMMAS 231 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 438,474 Number of extensions: 16693 Number of successful extensions: 249 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 176 Number of HSP's successfully gapped: 46 Length of query: 244 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 165 Effective length of database: 740,042 Effective search space: 122106930 Effective search space used: 122106930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)