BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3779.p
         (216 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...    94   7e-21
gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...    86   1e-18

>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score = 93.6 bits (231), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 116/212 (54%), Gaps = 9/212 (4%)

Query: 11  YLLQAAVWTVVLSLVAFVFGGLAGFVIALWRVSPHASLRTIASLYIQVVQGIPLLVILFV 70
           YLL    +T+ L+L A + G L G ++AL R+S   SL  +A+ Y+ +++ IPLL+++F 
Sbjct: 15  YLLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVNLMRSIPLLLVIFW 74

Query: 71  AYFGL-----AIAG----LKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEAAQC 121
            YF +      I G    ++L    +A I+F ++ AA+  EI R  IQ++ K Q  AA  
Sbjct: 75  FYFLVPVVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSISKGQVNAAYA 134

Query: 122 LGLNRFEQLSKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLARAGQIINNSTFQ 181
           LGL+  + +  V+LPQA +   P  +   + + ++ SL S++   D   A   I     +
Sbjct: 135 LGLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGASVKIAQRDSR 194

Query: 182 PFTVFGCVALIYFCLCFPLSALSKHFERKLNV 213
              ++  VA++YF L F LS++ K  ++++ +
Sbjct: 195 VVEMYLFVAIVYFVLSFALSSMVKQLQKRIAI 226


>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score = 86.3 bits (212), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 102/215 (47%), Gaps = 15/215 (6%)

Query: 12  LLQAAVWTVVLSLVAFVFGGLAGFVIALWRVSPHASLRTIASLYIQVVQGIPLLVILFVA 71
           LL    WT+ ++  A++F  + G +I + R +    L  +   Y+++ + IPLLV  FV 
Sbjct: 21  LLSGLGWTLAVAFFAWIFAFVLGSLIGIARTTEKRWLVGLGGAYVELFRNIPLLVQFFVW 80

Query: 72  YFGLAIAGL---------KLTP----LVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEA 118
           YF   I GL          L P     V A I    + ++ + E  R  IQ++P+ Q  A
Sbjct: 81  YF--VIPGLVPAVKTWVITLDPTIHQFVTAIICLGFFTSSRIAEQVRSGIQSLPRGQRNA 138

Query: 119 AQCLGLNRFEQLSKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLARAGQIINNS 178
              LGL   +    V+LP A +I  PP    ++ ++KNT++A  IG V+L    + +   
Sbjct: 139 GYALGLTGMQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTREMGEM 198

Query: 179 TFQPFTVFGCVALIYFCLCFPLSALSKHFERKLNV 213
           TF+ F  FG   L+Y  +    + +    ER+  V
Sbjct: 199 TFRYFEAFGAATLMYVVIAMLANRVMALVERRTAV 233


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.331    0.142    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 387,931
Number of extensions: 14572
Number of successful extensions: 85
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 2
Length of query: 216
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 138
Effective length of database: 743,337
Effective search space: 102580506
Effective search space used: 102580506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 127 (53.5 bits)