BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3778.p
         (227 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...    96   1e-21
gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...    82   2e-17

>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score = 96.3 bits (238), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/207 (33%), Positives = 103/207 (49%), Gaps = 9/207 (4%)

Query: 6   DFMSVFAQWDRLLLGAWLTIQLSALSIVLGFVLGTLCAMAGKSHLEVLRGLVKAYVEIIR 65
           DF  +   W  LL G   T+QL+  + + G + GTL A+A  S  + L  L  AYV ++R
Sbjct: 5   DFDVISRTWPYLLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVNLMR 64

Query: 66  NTPLLVQVFLVFFGLASI---------GWKLSAETAAVIALTLNVGAYTTEIMRAGINSI 116
           + PLL+ +F  +F +  +           +L A+ +A I   +   AY  EIMRAGI SI
Sbjct: 65  SIPLLLVIFWFYFLVPVVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGIQSI 124

Query: 117 HPGQIEAAECLGMSRLHVYWHVVLLPAVERVYPSLTSQFILLMLASSITSQISAEELTAT 176
             GQ+ AA  LG+S       VVL  A   + P L +Q I+L    S+ S ++  +    
Sbjct: 125 SKGQVNAAYALGLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGA 184

Query: 177 ANLVQSETFRSFEVYAVIAVAYLVLSF 203
           +  +     R  E+Y  +A+ Y VLSF
Sbjct: 185 SVKIAQRDSRVVEMYLFVAIVYFVLSF 211


>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score = 82.0 bits (201), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 101/206 (49%), Gaps = 14/206 (6%)

Query: 12  AQWDRLLL-GAWLTIQLSALSIVLGFVLGTLCAMAGKSHLEVLRGLVKAYVEIIRNTPLL 70
             W  +LL G   T+ ++  + +  FVLG+L  +A  +    L GL  AYVE+ RN PLL
Sbjct: 15  GTWGYMLLSGLGWTLAVAFFAWIFAFVLGSLIGIARTTEKRWLVGLGGAYVELFRNIPLL 74

Query: 71  VQVFLVFFGLASI-----GWKLSAETA------AVIALTLNVGAYTTEIMRAGINSIHPG 119
           VQ F+ +F +  +      W ++ +        A+I L     +   E +R+GI S+  G
Sbjct: 75  VQFFVWYFVIPGLVPAVKTWVITLDPTIHQFVTAIICLGFFTSSRIAEQVRSGIQSLPRG 134

Query: 120 QIEAAECLGMSRLHVYWHVVLLPAVER-VYPSLTSQFILLMLASSITSQISAEELTATAN 178
           Q  A   LG++ +  Y   VLLP   R + P LTS+ + L+  +++   I   EL     
Sbjct: 135 QRNAGYALGLTGMQTY-RFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRTR 193

Query: 179 LVQSETFRSFEVYAVIAVAYLVLSFL 204
            +   TFR FE +    + Y+V++ L
Sbjct: 194 EMGEMTFRYFEAFGAATLMYVVIAML 219


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.328    0.137    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 330,333
Number of extensions: 10009
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 2
Length of query: 227
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 148
Effective length of database: 740,042
Effective search space: 109526216
Effective search space used: 109526216
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 127 (53.5 bits)