BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3771.p
         (397 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093503|ref|YP_001098578.1| putative peptidase M20D, amidoh...   631   0.0  

>gi|134093503|ref|YP_001098578.1| putative peptidase M20D,
           amidohydrolase [Herminiimonas arsenicoxydans]
          Length = 397

 Score =  631 bits (1627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 298/395 (75%), Positives = 336/395 (85%)

Query: 1   MKLIDPIVQFQSELQQIRRDIHAHPELAYEEVRTADVVAQKLTEWGIPVVRGLGVTGVVG 60
           M+LIDPI++F  ELQ IRR IHA+PEL +EE  TA+ VA KLTEWGIPV+RG+GVTGVVG
Sbjct: 1   MQLIDPIIEFHHELQAIRRAIHANPELCFEERETAEFVAGKLTEWGIPVLRGMGVTGVVG 60

Query: 61  IIKQGDSPRAIGLRADMDALPMPEINTFAHASRHAGKMHACGHDGHTAMLLGAAYYLARH 120
           II+ G+S RAIGLRADMDALP+ EINTF H SR+AGKMHACGHDGHTAMLLGAA+YL++H
Sbjct: 61  IIRNGNSDRAIGLRADMDALPIQEINTFPHTSRNAGKMHACGHDGHTAMLLGAAHYLSQH 120

Query: 121 RNFDGTVYVIFQPAEEGGRGAERMIQDGLFEQYPMDAVFGMHNWPGIPAGHFGVTPGAQM 180
           +NFDGTVY+IFQPAEEGG GA+RM+ DGLF Q PM AVFGMHNWPGIP G FGVT G  M
Sbjct: 121 KNFDGTVYLIFQPAEEGGGGAKRMMDDGLFTQCPMQAVFGMHNWPGIPVGEFGVTAGPMM 180

Query: 181 ASSNEFHVTVKGRGSHAAQPHKAADPVMTAVHIAQAWQSIVARNINPNDPAVVSITQIHT 240
           ASSNEF V V G+G+HAAQPHK  DP+M AV IAQ+WQ+I+ RN +P D A +SITQIH 
Sbjct: 181 ASSNEFEVIVSGKGAHAAQPHKGIDPIMVAVQIAQSWQTIITRNKSPIDAAALSITQIHA 240

Query: 241 GSATNVIPDEAMMVGTVRTFSLPVLDLIERRMKEIAEHTAAAFDATVDFRFNRNYPPLIN 300
           GS TNVIPD A ++GTVRTF L VLDLIE RM+ IAEHTA AFDATV+F F RNYPPLIN
Sbjct: 241 GSTTNVIPDNARLIGTVRTFDLKVLDLIENRMRAIAEHTAQAFDATVEFHFKRNYPPLIN 300

Query: 301 HAKETAFAVEVLTEQFGADRVDAHTEPTMGAEDFAFMLQHKPGCYVFLGNGDGGHRDQGH 360
           HAKETAFAV++L    GA+ V+A  EPTMGAEDFAFMLQ KPGCYVF+GNG+G HR  GH
Sbjct: 301 HAKETAFAVDILQGIVGAEHVNAQVEPTMGAEDFAFMLQDKPGCYVFIGNGEGDHRVAGH 360

Query: 361 GLGPCNLHNPSYDFNDDLLPIGATYWVRLAEKFLQ 395
           GLGPCNLHNPSYDFNDDLLPIGATYWVRLAE FL+
Sbjct: 361 GLGPCNLHNPSYDFNDDLLPIGATYWVRLAEAFLK 395


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 817,108
Number of extensions: 35013
Number of successful extensions: 91
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 313
Effective length of database: 723,567
Effective search space: 226476471
Effective search space used: 226476471
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)