BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3768.p (700 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093705|ref|YP_001098780.1| putative periplasmic assimilato... 163 3e-41 gi|134093636|ref|YP_001098711.1| NAD dependent formate dehydroge... 136 4e-33 gi|134096492|ref|YP_001101567.1| putative molybdopterin oxidored... 124 1e-29 gi|134096579|ref|YP_001101654.1| NAD dependent formate dehydroge... 117 1e-27 gi|134094636|ref|YP_001099711.1| formate dehydrogenase subunit a... 106 3e-24 >gi|134093705|ref|YP_001098780.1| putative periplasmic assimilatory nitrate reductase, large subunit [Herminiimonas arsenicoxydans] Length = 944 Score = 163 bits (412), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 183/720 (25%), Positives = 308/720 (42%), Gaps = 96/720 (13%) Query: 4 TIVRAACPHDCPDTCALLVTVKDGVATEVRGDPDHPPTSGVLCTKVSRYAERTYH----- 58 T +A C + C C +L+ VRGDPDHP G LCTK S T H Sbjct: 27 TETKATCCY-CGVGCGVLIQSDGEKVIAVRGDPDHPANFGRLCTKGS-----TLHLMARP 80 Query: 59 ----QDRLLHPMRRVGKKGEGKFERISWEQAISTIAQRLGEIAR-RDPQAILPYSYAGTM 113 Q R L+P R+ + E ER SW + I + R + P ++ Y Sbjct: 81 ALQQQSRALYPEMRLARSDER--ERTSWATTMDFIVNKFAATIRDQGPDSVGFY----LS 134 Query: 114 GQVQGESMAGRFFNRL-----GASQLERT--ICSSAGGAGYRYTIGTRVGSDL-EQVDHA 165 GQ+ E FN+L G + ++ +C S+ AGY+ T+G E +D A Sbjct: 135 GQLLTEDY--YVFNKLAKGLIGTNNVDTNSRLCMSSAVAGYKQTLGADAPPPCYEDIDQA 192 Query: 166 KLILIWGGNPIASNLHFWTRVQAAKRNGARL--IAIDPYRSLTAEKCHQHIALLPGTDAA 223 ++I I G N ++ + R++ A++ +L I DP R+ TA + + +LPGTD A Sbjct: 193 EVIFIVGSNTAYAHPILYRRIEDARKANPQLKIIVADPRRTDTAREADLFLPILPGTDVA 252 Query: 224 LALGLMHVLIAEDLLDHDYIDRYTLGFDQLQQRVAQWTPARTAEVCGISAEQVQELAREY 283 L G++H+ + EDL+D DYI +T F +L+Q V ++TP A++CGI E + + AR + Sbjct: 253 LFNGMLHICLWEDLVDLDYIAAHTEDFAELKQTVREYTPKFVADICGIKEEDLMQAARMF 312 Query: 284 GRVALAGEGVFIRANYGLQRVRGGGMAARNVACL---------------PALVGAWRHAA 328 G+ + A ++ + GL + G A+N A + P + +A Sbjct: 313 GK-STATLSMYCQ---GLNQSSSG--TAKNAALINLHLATHQIGKPGAGPFSLTGQPNAM 366 Query: 329 GGVQLSVSDSFPKDMAALSRPDLAARHGQPSRVINM-STIGDDLLRPASPAFGPKVEALI 387 GG ++ + L+ P A + V ++ +T G + +++ + Sbjct: 367 GGREVGGLATMLSAHRDLANPQHRAEIAKLWGVADVPATPGKSAVEMFEAVRTGEIKIIW 426 Query: 388 VYNSNPVAVAPESGKVAQGFAREDLFTVVLEHFQTDTADYADILLPATTQLEHIDVHASY 447 + +NP PE + + +L V + T + DYAD+LLPA+T E + + Sbjct: 427 IVCTNPAQSMPEQAMIREALRNAELVIVQEAYKTTASCDYADVLLPASTWSEK-EGTVTN 485 Query: 448 GHVYIIANNAAIAPMGEAKPNTEI----FRLLAAAMGFTEDCFK-DSDDQLAAVAFRRDD 502 I + + +GE++ + EI R L A+G F +S +++ R+ Sbjct: 486 SERRITRFKSVLPKLGESRHDWEIAVDFARRLEGALGKQSSIFPFESTEEIWNE--HRES 543 Query: 503 PRSGDYD-----WEQLKQKGWQRLAVPVAP-------FAEGGFATPSGKCEFYSEQMKAA 550 R D D ++ L+++G Q+ P + +G F T SG+ +F + Sbjct: 544 TRGRDLDITGLSFKLLEEQGPQQWPFPEGATTGRKRLYEDGIFPTLSGRAKFVNT----- 598 Query: 551 GLDPLPTYIPPYESVASNPQLGAKYPLAMISPPARNFLN--SSFVNVQSLRDTEGEPHLD 608 Y P E V A+YP + + R+ + S V L EP + Sbjct: 599 ------VYQPVAEPV------DARYPFHLTTGRLRDQWHGMSRTGTVAQLFSHASEPSVV 646 Query: 609 MHPQDAAARGIVNGDTVRIFNDRGAMQARVRVTDKARPGLVVGLSIWWKKFAADGKNANE 668 + D R + GD V + + RG+ V + D R G + + W + G+ +E Sbjct: 647 LSKIDMERRLLNVGDLVHVTSKRGSQIFPVALGDDMRAGQAF-IGMHWGEEYVSGRGRDE 705 >gi|134093636|ref|YP_001098711.1| NAD dependent formate dehydrogenase subunit alpha Fdh1A [Herminiimonas arsenicoxydans] Length = 946 Score = 136 bits (342), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 178/739 (24%), Positives = 297/739 (40%), Gaps = 103/739 (13%) Query: 6 VRAACPHDCPDTCALLVTVKDGVATEVRGDPDHPPTSGVLCTKVSRYAERTYHQDRLLHP 65 V + CP+ C C L +KD V G D P LC K + H RL P Sbjct: 229 VDSVCPY-CGVGCQLTYNIKDNKILYVEGR-DGPANRERLCVKGRYGFDYANHPHRLTKP 286 Query: 66 M-RRVGKKGEGKF----ERI-------SWEQAISTIAQRLGEIARRDPQAILPYSYAGTM 113 + RR G F +R+ +WE+A+ +I RD S AG Sbjct: 287 LIRRADAPKRGDFVMDPDRVMEVFREATWEEALEVAGGNFAKI--RDTHG--KKSLAG-F 341 Query: 114 GQVQGESMAGRFFNRL-----GASQLERT--ICSSAGGAGYRYTIGT-RVGSDLEQVDHA 165 G +G + F +L G++ ++ +C ++ IG+ V + + V A Sbjct: 342 GSAKGSNEEAYLFQKLVRTGFGSNNVDHCTRLCHASSVVALLEGIGSGAVSNPVMDVTKA 401 Query: 166 KLILIWGGNPIASNLHFWTRVQAAKRNGARLIAIDPYRSLTAEKCHQHIALLPGTDAALA 225 ++++I G NP ++ T ++ A NG +LI DP R+ A H+ + TD A+ Sbjct: 402 EVVIIIGANPTVNHPVAATWIKNAVSNGTKLIVCDPRRTDMARIAHRFMQFKADTDVAML 461 Query: 226 LGLMHVLIAEDLLDHDYIDRYTLGFDQLQQRVAQWTPARTAEVCGISAEQVQELAREYGR 285 +M+V++ E L+D ++I+ T+G+++L++ V +TP A +CGI AE ++ +AR Y Sbjct: 462 NAMMNVIVTEGLVDKEFIESRTIGYEELRKNVEGYTPELMAPICGIDAETLRYVARLYA- 520 Query: 286 VALAGEGVFIRANYGLQRVRGGGMAARNVACLPALVGAWRHAAGGVQ--------LSVSD 337 + I G+ + G AR + L + G G+ SD Sbjct: 521 ---TSKASMILWGMGVSQHIHGTDNARCLIALSLMTGQIGRPGTGLHPLRGQNNVQGASD 577 Query: 338 S------FPKDMAALSRPDLAARHGQPSRVINMSTIGDDLLRPASPAF----------GP 381 + +P D ++S P + A ++ NMS DLL P P Sbjct: 578 AGLIPMVYP-DYQSVSDPKIRANF---AKAWNMSV---DLLDP-EPGLTVVEIMHAITDG 629 Query: 382 KVEALIVYNSNPVAVAPESGKVAQGFAREDLFTVVLEHFQTDTADYADILLPATTQLEHI 441 K+ L V NP P++ + A D VV + F T+TA AD++LPA+ E Sbjct: 630 KIRGLYVQGENPAMSDPDANHAREALAALDHL-VVQDIFLTETAYLADVILPASAFPEKT 688 Query: 442 DVHASYGHVYIIANNAAIAPMGEAKPNTEIFRLLAAAMGFTEDCFKDSDDQLAAVAFRRD 501 + + A+ P GEAK + I + +A +G + +K + + R Sbjct: 689 GTFTNTDRTVQMGRQ-ALNPPGEAKQDLWIIQQMANRLGCNWN-YKHVSEVFDEM--RHT 744 Query: 502 DPRSGDYDWEQLKQKGWQRLAVPVAPFAEGG--------FATPSGKCEFYSEQMKAAGLD 553 P WE+L+++ + P + G F SG+ F Sbjct: 745 MPSIAGITWERLERE--DSVTYPCEKEGDPGEPVVFVDSFPRESGRARF----------- 791 Query: 554 PLPTYIPPYESVASNPQLGAKYPLAMISPPARNFLNSSFVNVQS--LRDTEGEPHLDMHP 611 +P I P A P +YP+ +I+ ++ + ++ L E +P +HP Sbjct: 792 -VPADIIP---AAERPD--TEYPMVLITGRQLEHWHTGSMTRRATVLDSIEPDPIALIHP 845 Query: 612 QDAAARGIVNGDTVRIFNDRGAMQARVRVTDKARPGLVVGLSIWWKKFAADGKNANEVTS 671 D A G GD + + + RG + R D + G V + F N +T+ Sbjct: 846 LDLANMGGKPGDIITLESRRGEVSLYARADDSSPRGAV------FVPFCYYEAAINRLTN 899 Query: 672 QRLTDMGNAPTFYDVLVQV 690 L G P F +++ Sbjct: 900 AALDPFGKIPEFKYCAIRI 918 >gi|134096492|ref|YP_001101567.1| putative molybdopterin oxidoreductase family protein [Herminiimonas arsenicoxydans] Length = 962 Score = 124 bits (312), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 126/259 (48%), Gaps = 28/259 (10%) Query: 3 TTIVRAACPHDCPDTCALLVTVKDGVATEVRGDPDHPPTSGVLCTKVSRYAERTYHQDRL 62 TT V+ + C C + V ++DG + G+PDHP GV+C K + A + Y RL Sbjct: 9 TTEVKCTTCYMCACRCGVRVHLRDGEVRYIDGNPDHPLNQGVICAKGASGAMKQYSPARL 68 Query: 63 LHPMRRV--GKKGEGKFERISWEQAISTIAQRLGEIARRDPQAILPYSYAGTMGQVQGES 120 P+ R ++G +F ISWE+A + + +RL +I DP+ +A G+ Q ++ Sbjct: 69 TKPLLRKPGAERGAAEFTEISWEEAFALLTERLAKIRSTDPR-----KFALFTGRDQMQA 123 Query: 121 MAGRFFNRLGASQL--ERTICSSAGGAGYRYTIGTRV----GSDLEQVDHAKLILIWG-- 172 + G F + G CS AG YTIG G DL D AKL ++ G Sbjct: 124 LTGLFARQFGTPNYAAHGGFCSVNMAAGMIYTIGGSFWEFGGPDL---DRAKLFIMLGTA 180 Query: 173 ----GNPIASNLHFWTRVQAAKRNGARLIAIDPYRSLTAEKCHQHIALLPGTDAALALGL 228 NP+ L KRNG + I+I+P R+ + + + + PGTD AL L L Sbjct: 181 EDHHSNPMKIAL------SKFKRNGGKFISINPIRTGYSAIADEWVPIKPGTDGALLLAL 234 Query: 229 MHVLIAEDLLDHDYIDRYT 247 +H +IA L D +++ RYT Sbjct: 235 IHEIIALGLYDREFLVRYT 253 >gi|134096579|ref|YP_001101654.1| NAD dependent formate dehydrogenase subunit alpha fdsA [Herminiimonas arsenicoxydans] Length = 956 Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 167/727 (22%), Positives = 283/727 (38%), Gaps = 91/727 (12%) Query: 14 CPDTCALLVTVKDGVATEVRGDPDHPPTSGVLCTKVSRYA-ERTYHQDRLLHPMRRVGKK 72 C C+ +K + +PD G C K R+A H+DR+L PM R K Sbjct: 247 CGVGCSFKAEMKGNEVVRMVPNPDGKANQGHACVK-GRFAWGYATHKDRMLKPMIR--SK 303 Query: 73 GEGKFERISWEQAISTIAQRLGEIARRDPQAILPYSYAGTMGQVQGESMAGRFFNRL--- 129 + +SWE+AI+ A I QA G + + + G +L Sbjct: 304 ISDPWREVSWEEAINYTASEFKRI-----QAKYGKDSIGGLVSSRCTNEEGYLVQKLVRA 358 Query: 130 --GASQLERT--ICSSAGGAGYRYTIGTRVGSD-LEQVDHAKLILIWGGNPIASNLHFWT 184 G + ++ +C S G G + T+G G+ E V + +I++ G NP+ ++ F + Sbjct: 359 AFGNNNVDTCARVCHSPTGYGLKVTLGESAGTQTFESVMKSDVIVVIGANPVNAHPVFAS 418 Query: 185 RVQAAKRNGARLIAIDPYRSLTAEKCH----QHIALLPGTDAALALGLMHVLIAEDLLDH 240 +++ R GA+LI +DP + + H H+ L+PGT+ A+ L +V+++E L Sbjct: 419 QMKRRIRQGAKLIVVDPRTTEMVKSPHVQADYHLKLMPGTNVAIVNALAYVILSEKLHKP 478 Query: 241 DYIDRYTLG--FDQLQQRVAQW--TPARTAEVCGISAEQVQELAREYGRVALAGEGVFIR 296 ++I F + + + Q +P ++ G+ AE ++ AR Y A A G I Sbjct: 479 EFIAERCEADSFKEWEHFILQEENSPEAVEKISGVPAEDIRAAARMY---ANAKNGS-IY 534 Query: 297 ANYGLQRVRGGGMAARNVACLPALVG-AWRHAAG--------GVQLSVS-DSFPKDMAAL 346 G+ G +A L G R G VQ S SFP ++ Sbjct: 535 YGLGVTEHAQGSTTVIGIANLAMATGNVGREGVGVNPLRGQNNVQGSCDMGSFPHELPGY 594 Query: 347 SRPDLAARHGQPSRVINMSTIGDDLLRPAS---PAFGPKVEALIVYNSNPVAVAPESGKV 403 + + N + LR + A L + V P++ V Sbjct: 595 RHVSDSTTRAEFEAAWNCVLDPEPGLRIPNMFDAAMDGTFMGLYCQGEDIVQSDPDTQHV 654 Query: 404 AQGFAREDLFTVVLEHFQTDTADYADILLPATTQLEHIDVHASYGHVYIIANNAAIAPMG 463 + + VV + F +TA YA + LP ++ LE + I+ + P Sbjct: 655 TAALSAMECI-VVQDIFLNETAKYAHVFLPGSSFLEKDGTFTNAERR--ISRVRKVMPPK 711 Query: 464 EAKPNTEIFRLLAAAMGF--TEDCFKDSDDQLAA-------VAFRRDDPRSGDYDWEQLK 514 K + E+ +L+ A+G+ + ++ D++A+ V+F+R D G W Sbjct: 712 AGKGDWEVTCMLSNALGYPMSYKHPREIMDEIASLTPTFTGVSFKRIDELGGSIQWPCND 771 Query: 515 QKGWQRLAVPVAPFAEGGFATPSGKCEFYSEQMKAAGLDPLPTYIPPYESVASNPQLGAK 574 + + F GK +F + AG ++ K Sbjct: 772 AAPEGTPTMHIGEFVR-------GKGKFIDTKYFGAG-----------------EKVTRK 807 Query: 575 YPLAMISPPARNFLNSSFVNVQSLRDTEG----EPHLDMHPQDAAARGIVNGDTVRIFND 630 +PL + + L+ V Q+ R E L++HPQDA RGI + D V I + Sbjct: 808 FPLILTTG---RILSQYNVGAQTRRTHNNMWHSEDRLEIHPQDALDRGIKHNDWVGIESR 864 Query: 631 RGAMQARVRVTDKARPGLVVGLSIWWKKFAADGKNANEVTSQRLTDMGNAPTFYDVLVQV 690 G R +T+ +PG+V + F AN +T+ N P + VQV Sbjct: 865 AGQTVLRAEITENVQPGVV------YTTFHFPESGANVITTSSSDWATNCPEYKVTAVQV 918 Query: 691 EKLPQPA 697 + QP+ Sbjct: 919 MPVTQPS 925 >gi|134094636|ref|YP_001099711.1| formate dehydrogenase subunit alpha FdnG (partial match) [Herminiimonas arsenicoxydans] Length = 988 Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 132/282 (46%), Gaps = 15/282 (5%) Query: 5 IVRAACPHDCPDTCALLVTVKDGVATEVRGDP--DHPPTSGVLCTKVSRYAERTYHQDRL 62 + R C H C CA V++GV VR +P D P G C K + E + + RL Sbjct: 77 VKRTVCTH-CSVGCASDAIVENGVW--VRQEPVFDSPINLGAHCAKGASLREHGHGEYRL 133 Query: 63 LHPMRRVGKKGEGKFERISWEQAISTIAQRLGEIARRD-PQAILPYSYAGTMGQVQGESM 121 +PM+ V GK++RISW+QA++ I ++ +I + P ++ + + + ++ Sbjct: 134 KYPMKLV----NGKYQRISWDQAMNEITAKMLDIKKASGPDSV--FFVGSSKHNNEQAAL 187 Query: 122 AGRFFNRLGASQLERT--ICSSAGGAGYRYTIGT-RVGSDLEQVDHAKLILIWGGNPIAS 178 +F + G + + IC S AG T G + + + ++K L G N + Sbjct: 188 LRKFVSFFGTNNTDHQARICHSTTVAGVANTWGYGAMTNSYNDMQNSKAALYIGSNAAEA 247 Query: 179 NLHFWTRVQAAKRNGARLIAIDPYRSLTAEKCHQHIALLPGTDAALALGLMHVLIAEDLL 238 + + AK NG ++I +DP + TA K Q++ + GTD GL++ + Sbjct: 248 HPVSMLHMLHAKENGTKMIVVDPRFTRTAAKADQYVRIRSGTDIPFLYGLLYHIFKNGWE 307 Query: 239 DHDYIDRYTLGFDQLQQRVAQWTPARTAEVCGISAEQVQELA 280 D YI+ G ++++ V WTP + E CG++ ++ A Sbjct: 308 DKKYINDRVYGMEKVKAEVMTWTPEKVEEACGVTEAEMYRAA 349 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.135 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,432,367 Number of extensions: 62812 Number of successful extensions: 201 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 193 Number of HSP's successfully gapped: 5 Length of query: 700 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 612 Effective length of database: 710,387 Effective search space: 434756844 Effective search space used: 434756844 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)