BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3764.p (316 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (... 207 8e-55 gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herm... 114 6e-27 gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminii... 97 1e-21 gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehyd... 89 3e-19 gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiim... 75 4e-15 >gi|134094049|ref|YP_001099124.1| putative glyoxylate reductase (glycolate reductase) [Herminiimonas arsenicoxydans] Length = 327 Score = 207 bits (526), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 121/312 (38%), Positives = 177/312 (56%), Gaps = 16/312 (5%) Query: 10 LIVARLPQP-LLELLQQNFTCHNLILDGL-SEAQLAAIAPQVRAIAANGEAKVGREFMAR 67 ++VAR P ++E LQQ F + D + S A+L + K+ E + Sbjct: 5 ILVARATFPDVIERLQQQFEVESNQEDRIFSPAELHEKMQGKDGVIITSSEKLSGEVITA 64 Query: 68 FAALEIVSVFGVGYDGVDVPAARERGIEVTHTPDVLNDDVADLAMALMLAVARKVVRADH 127 L+ + VGY+ +DV AA + GI VT+TPDVLN+ AD A L++A AR+ ++H Sbjct: 65 NPQLKAICNVAVGYNNIDVAAATKAGIMVTNTPDVLNETTADYAWTLLMANARRTSESEH 124 Query: 128 FARSGQWQNGPFP--LTTKVSGARLGIVGLGRIGQAIAKRAAAFDMQIAYHNRSR----- 180 + R+G+W+N F L V GA LGI+G+GRIGQAIA+R+ FDMQ+ YHNRSR Sbjct: 125 YLRAGKWKNWRFDQFLGADVHGATLGILGMGRIGQAIARRSMGFDMQVIYHNRSRLTPDQ 184 Query: 181 ----KDVPYTYMEDIVSLAAAVDFLVMITPGGAGTRALVNAEVLEALGPQGYLINVARGS 236 + Y E+++ A D L+++ P T ++ A L + P L+N+ARG Sbjct: 185 EAHANNARYVSKEELLRTA---DHLILVLPYSEQTHHIIGAAELALMKPTATLVNIARGG 241 Query: 237 VVDETALITALQAGKIAGAGLDVFANEPHIPAELAALENVVLTPHMASGTLLTRTAMAEL 296 +VD+ ALI AL+ +IA AGLDV+ NEP + + L NVVLTPH+ S + TR AM++ Sbjct: 242 IVDDVALIAALREHRIASAGLDVYENEPALHPDFLTLSNVVLTPHIGSASEKTRRAMSDC 301 Query: 297 AFTNLQVHFDGK 308 A N+ G+ Sbjct: 302 ASLNMVAALSGQ 313 >gi|134096368|ref|YP_001101443.1| phosphonate dehydrogenase [Herminiimonas arsenicoxydans] Length = 336 Score = 114 bits (285), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 94/305 (30%), Positives = 145/305 (47%), Gaps = 24/305 (7%) Query: 6 RPTVLIVARLPQPLLELLQQ-NFTCHNLILDGLSEAQLAAIAPQVRAIAANGEAKVGREF 64 +P ++I + ++E+L N L+ L +L + A+ A V F Sbjct: 2 KPKIVITHWVHPEIVEMLSSVAEVVTNDTLETLPREELLRRSKDADAVMAFMPDSVDDSF 61 Query: 65 MARFAALEIVSVFGVGYDGVDVPAARERGIEVTHTPDVLNDDVADLAMALMLAVARKVVR 124 +A L+IV GYD DV A +RG+ PD+L A+L + L+L + R V+ Sbjct: 62 LAACPKLKIVFAALKGYDNFDVDACTKRGVWFGIVPDLLTVPTAELTVGLLLGLTRHVMA 121 Query: 125 ADHFARSGQWQNG-PFPLTTKVSGARLGIVGLGRIGQAIAKRAAAFDMQIAYHNRSRKDV 183 D RSG + P ++G+ +GI+G+GR+G+AIAKR + F+M Y + V Sbjct: 122 GDDHVRSGTFHGWRPKLYGAGLAGSTIGIIGMGRVGKAIAKRLSGFEMNAVYCD----SV 177 Query: 184 PYTYMED---------IVSLAAAVDFLVMITPGGAGTRALVNAEVLEALGPQGYLINVAR 234 P +++ L DF+V + P + T L++A + + YL+N +R Sbjct: 178 PLNPVDEQAWNARQVSFDELLTCSDFVVPMLPMTSDTFHLIDAHAISKMRRGSYLLNTSR 237 Query: 235 GSVVDETALITALQAGKIAGAGLDVFANE----PHIPAEL--AALEN---VVLTPHMASG 285 GSVVDE A++ AL G +AG DVF E P P + A L N + TPH+ SG Sbjct: 238 GSVVDENAVVEALNQGHLAGYAADVFEMEEWARPDRPLTVPQALLNNRTQTLFTPHVGSG 297 Query: 286 TLLTR 290 R Sbjct: 298 VKKVR 302 >gi|134096589|ref|YP_001101664.1| formate dehydrogenase [Herminiimonas arsenicoxydans] Length = 400 Score = 96.7 bits (239), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 65/257 (25%), Positives = 121/257 (47%), Gaps = 10/257 (3%) Query: 63 EFMARFAALEIVSVFGVGYDGVDVPAARERGIEVTHTPDVLNDDVADLAMALMLAVARKV 122 E +A+ L+++ G+G D D+ AA + I V + VA+ + ++L+ R Sbjct: 107 ERIAKAKKLKMIVTAGIGSDHTDLEAANKHNITVAEVTYCNSHSVAEHVLMMILSQVRNY 166 Query: 123 VRADHFARSGQWQ-NGPFPLTTKVSGARLGIVGLGRIGQAIAKRAAAFDMQIAYHNRSR- 180 + + G W + + +G V GRIG + + FD+++ Y +R R Sbjct: 167 IPSYKQVIDGGWNIADCVSRSYDLEAMSVGTVAAGRIGLRVLRLLHPFDVKLHYMDRHRL 226 Query: 181 -----KDVPYTYMEDIVSLAAAVDFLVMITPGGAGTRALVNAEVLEALGPQGYLINVARG 235 K++ TY + SL D + + P T ++N + L+ Y+IN ARG Sbjct: 227 PTAVEKELNLTYHSTLESLTKVCDVVTLNCPLHPETEHMINEKTLKNFKRGAYIINTARG 286 Query: 236 SVVDETALITALQAGKIAGAGLDVFANEPHIPAE--LAALENVVLTPHMASGTLLTRTAM 293 + D A++ AL++G++AG DV+ +P P + + +TPH++ +L +T Sbjct: 287 KLCDRDAIVAALKSGQLAGYAGDVWFPQP-APKNHPWRTMPHHGMTPHISGTSLTAQTRY 345 Query: 294 AELAFTNLQVHFDGKPV 310 A L+ +F+G+P+ Sbjct: 346 AAGTREILECYFEGRPI 362 >gi|134096490|ref|YP_001101565.1| putative phosphoglycerate dehydrogenase(partial) [Herminiimonas arsenicoxydans] Length = 317 Score = 89.0 bits (219), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 129/282 (45%), Gaps = 23/282 (8%) Query: 42 LAAIAPQVRAIAANGEAKVGREFMARFAALEIVSVFGVGYDGVDVPAARERGIEVTHTPD 101 L A+ V A+ KV + L +V GVG D +DV A + RGI+V Sbjct: 44 LLAMLGNVDALIVRNRTKVDIALLDAAPKLRVVGRLGVGLDNIDVDACKARGIDVFPATG 103 Query: 102 VLNDDVADLAMALMLAVARKVVRADHFARSGQWQNGPFPLTT-----KVSGARLGIVGLG 156 VA+ + +A+ R+ + RS + G +P T +++G LG++G G Sbjct: 104 ANAGAVAEYVIGTAMALLREA-----YTRSAETAAGTWPRTALSNGREIAGKTLGLIGFG 158 Query: 157 RIGQAIAKRAAAFDMQIAYHN---------RSRKDVPYTYMEDIVSLAAAVDFLVMITPG 207 IGQ A+ A A + + H+ + V + +++ A D + + P Sbjct: 159 GIGQLTARLAQALGVTVIAHDPLLAPDAAIWQQAGVACKQLHEVLEQA---DIVSLHIPL 215 Query: 208 GAGTRALVNAEVLEALGPQGYLINVARGSVVDETALITALQAGKIAGAGLDVFANEPHIP 267 TR L+ A+ L + P LIN +RG +VDE AL AL + + GA +DVFA EP P Sbjct: 216 TTNTRNLIGADALARMKPDAVLINTSRGEIVDEAALAQALHSANLGGAAIDVFAQEPLAP 275 Query: 268 AE-LAALENVVLTPHMASGTLLTRTAMAELAFTNLQVHFDGK 308 LA V+LTPH+A T + T ++ L + + K Sbjct: 276 GNALANAPRVILTPHIAGVTTESNTRVSALIAQRVAAYLQKK 317 >gi|134096605|ref|YP_001101680.1| glyoxylate reductase [Herminiimonas arsenicoxydans] Length = 327 Score = 75.1 bits (183), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/247 (28%), Positives = 104/247 (42%), Gaps = 18/247 (7%) Query: 84 VDVPAARERGIEVTHTPDVLNDDVA--DLAMALMLAVARKVVRADHFARSGQWQNGPFP- 140 +D+ AA R I + + D A +L AL++A RK+ + + G WQ Sbjct: 83 IDLSAAAARNITIVEG---VGDPTAPAELTWALIMAAMRKLPQYVGNLKDGLWQIASLSS 139 Query: 141 ----LTTKVSGARLGIVGLGRIGQAIAKRAAAFDMQIAYHNRSRKDVP-----YTYMEDI 191 L + G LGI G GRIG+ +A AF M++ R Y Sbjct: 140 AHNTLGAVLKGRTLGIWGYGRIGRMVAGYGQAFGMKVLVWGRDASRAAAVQDGYQAASSR 199 Query: 192 VSLAAAVDFLVMITPGGAGTRALVNAEVLEALGPQGYLINVARGSVVDETALITALQAGK 251 + D L + TR +V A L + +N +R +V AL TAL+ G+ Sbjct: 200 EEFFSTADVLSLHLRLNDATRGIVTASDLAHMKSSALFVNTSRAELVASDALQTALEQGR 259 Query: 252 IAGAGLDVFANEPHIP-AELAALENVVLTPHMASGTLLTRTAMAELAFTNLQVHFDGKP- 309 A LDVF +EP P + L +ENV+ +PH+ + AF N+ +G P Sbjct: 260 PGYAALDVFESEPLAPTSSLLRMENVLASPHLGYVEKDSYELYFRSAFENIVAFANGAPK 319 Query: 310 -VVTPVP 315 V+ P P Sbjct: 320 NVLLPKP 326 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 499,892 Number of extensions: 17911 Number of successful extensions: 84 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 75 Number of HSP's successfully gapped: 5 Length of query: 316 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 234 Effective length of database: 730,157 Effective search space: 170856738 Effective search space used: 170856738 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)