BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3762.p (634 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 983 0.0 gi|134094288|ref|YP_001099363.1| putative ABC transporter permea... 276 2e-75 gi|134096472|ref|YP_001101547.1| putative ABC transporter [Hermi... 270 2e-73 gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 249 2e-67 gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/... 237 1e-63 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 983 bits (2541), Expect = 0.0, Method: Compositional matrix adjust. Identities = 482/608 (79%), Positives = 543/608 (89%), Gaps = 3/608 (0%) Query: 1 MRRYPNSSASPQAPIKR-QRGDWEVVRTLLPYLWTYKWRVMLALAFLVGAKLANVGVPLV 59 MRR +S++S AP+ R DW ++TL+PYLWTYKWRV LAL FL+ AK ANVGVPLV Sbjct: 20 MRR--SSASSEPAPLSSGNRNDWATLKTLIPYLWTYKWRVALALLFLIAAKFANVGVPLV 77 Query: 60 LKKLVDAMTITPAHPQALLVLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTIAL 119 LK+L+D +TI PA P ALLVLP+G+L AYGALRL+T LFTELRE FA+VTQRAVRTIAL Sbjct: 78 LKRLIDGLTIDPASPHALLVLPVGILFAYGALRLSTTLFTELREYTFAKVTQRAVRTIAL 137 Query: 120 QVFRHLHALSLRFHLNRQTGGMSRDIERGTRGVSSLVSYTLFSILPTLIEIVLVLAYLAT 179 QVFRHLHALSLRFHLNRQTGGM+RDIERGTRG+SSLVSYTLFSILPTL+EI LVL YL Sbjct: 138 QVFRHLHALSLRFHLNRQTGGMTRDIERGTRGISSLVSYTLFSILPTLVEITLVLGYLVL 197 Query: 180 HYDIWFSLITVGALVLYILFTITVTEWRTHFRRSMNELDSHANTRAIDSLLNYETVKYFG 239 HYDIWFS+IT ALV YI FT+ VTEWRTHFRR+MN+LDS ANT+AIDSL+NYETVKYFG Sbjct: 198 HYDIWFSIITAVALVSYIAFTVVVTEWRTHFRRTMNDLDSKANTKAIDSLINYETVKYFG 257 Query: 240 NEEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIALAVTLILWRAIAGVIDGSMTL 299 NE++EA+RYDEGL+RYE AAVKSQ+SLS+LNTGQS+IIA+AVTLILWRA GVI G+MTL Sbjct: 258 NEDYEAKRYDEGLKRYETAAVKSQTSLSVLNTGQSSIIAVAVTLILWRATQGVISGTMTL 317 Query: 300 GDMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFSLLEENREVADRPGAQSLKTHG 359 GD+VLVNAFMIQLYIPLNFLGV+YREIKQSLADMERLFSLL+++RE+AD+P Q+L G Sbjct: 318 GDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLDQHREIADKPNTQALVVQG 377 Query: 360 AELHFEHVDFSYERNRQILFDVDFKVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDQGAI 419 AE+ F HV FSYE RQILFDVDF + AGTTTAVVGHSGSGKSTLSRLL+RFYDV++GAI Sbjct: 378 AEVKFSHVGFSYEAKRQILFDVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRFYDVNEGAI 437 Query: 420 RIDGQDLRNVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGASREQIVAAAKAAYIHD 479 IDGQD+R+VTQASLR AIGIVPQDTVLFNDTIEYNIAYGKPGAS++ IVAAAK+AYIHD Sbjct: 438 LIDGQDVRDVTQASLRNAIGIVPQDTVLFNDTIEYNIAYGKPGASKDDIVAAAKSAYIHD 497 Query: 480 FIESLPEGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQ 539 FIESLP+GYA+MVGERGLKLSGGEKQRVAIARTLLK PAILIFDEATSALDS+AEQAIQ Sbjct: 498 FIESLPDGYATMVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEATSALDSKAEQAIQA 557 Query: 540 QLEEIARERTTLVIAHRLSTIVNAHQILVMDHGRIVERGTHAGLLLAGGLYAQMWLRQQA 599 QL+EIA++RTT+VIAHRLSTIV+A QILV+DHGRIVERGTHA LL A G YAQMW RQQA Sbjct: 558 QLKEIAKDRTTMVIAHRLSTIVDAAQILVLDHGRIVERGTHAQLLAADGAYAQMWARQQA 617 Query: 600 GAEEEGGS 607 +E S Sbjct: 618 RQDESPAS 625 >gi|134094288|ref|YP_001099363.1| putative ABC transporter permease [Herminiimonas arsenicoxydans] Length = 579 Score = 276 bits (707), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 200/586 (34%), Positives = 314/586 (53%), Gaps = 32/586 (5%) Query: 25 VRTLLPYLWTYKWRVMLALAFLVGAKLANVGVPLVLKKLVD-AMTITPAHPQALLVLPLG 83 +R LL +L YK + LA L+ A A + +P ++++D H + Sbjct: 1 MRGLLKFLLPYKKQFALAGIALIVAAAATLAIPYAFRQMIDLGFGANGIHDTG--SINTY 58 Query: 84 LLVAYGALRLATALFTELRELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMSR 143 L +G + AL T R M + + +R + V+ H+ S +F Q+G + Sbjct: 59 FLALFG-VACILALATAARFYMVSWLGERVTADVRNAVYSHVVTQSPQFFETTQSGEVLS 117 Query: 144 DIERGTRGVSSLVSYTLFSILPTLIEIVLVLAYLATHYDIWFSLITVGALVLYILF-TIT 202 + T + +L+ ++ L L + ++ + I + +++L +L T+ Sbjct: 118 RLTTDTTLIQTLIGTSISMALRN------TLLFAGGLVMLFVTSIKLSSIILVMLIATVL 171 Query: 203 VTEWRTHFRRSMNELDSHANTRAIDS------LLN-YETVKYFGNEEFEARRYDEGLQRY 255 W F R + L + R DS +LN TV+ F +E+ E+ R+ + ++ Sbjct: 172 PIVW---FGRRVRSLSRASQDRVADSSALAGEILNAMPTVQAFTHEKIESERFSKTVEDA 228 Query: 256 ERAAVKSQSSLSLLNTGQSAIIALAVTLILWRAIAGVIDGSMTLGDMVLVNAFMIQLYIP 315 + A++ + SLL +I A+ +LW VIDG+M+ G++ F++ I Sbjct: 229 FKTAMRRIRARSLLTMIAILLIFGAIVFVLWLGAHAVIDGTMSGGEL---GQFILYSAIV 285 Query: 316 LNFLGVLYREI---KQSLADMERLFSLLEENREVADRPGAQSL---KTHGAELHFEHVDF 369 +G L + +++ ERL LL ++ L + +G+ L + V F Sbjct: 286 AGAIGALSEVVGDAQRAAGATERLLELLAVQSPISSPAVPLPLPPRRANGSSLALDLVSF 345 Query: 370 SYERN--RQILFDVDFKVQAGTTTAVVGHSGSGKSTLSRLLYRFYDVDQGAIRIDGQDLR 427 Y + + ++AG T AVVG SG+GK++L +LL RFYD +G I +DG D+R Sbjct: 346 YYPSRPLTPAISNFSIAIKAGETVAVVGPSGAGKTSLFQLLLRFYDPQEGVIELDGVDIR 405 Query: 428 NVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPGASREQIVAAAKAAYIHDFIESLPEG 487 + +LR IGIVPQDTV+F+ NI YG+P AS E+++A AK A H+FI+ LPEG Sbjct: 406 QLDLHALRNTIGIVPQDTVIFSANAMENIRYGRPDASDEEVIAVAKMAAAHEFIDRLPEG 465 Query: 488 YASMVGERGLKLSGGEKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARE 547 Y S +GERG++LSGG++QR+AIAR LLK+P +L+ DEATSALD+ +E+ +Q LE Sbjct: 466 YQSFLGERGVRLSGGQRQRIAIARALLKNPPLLLLDEATSALDAESERLVQSALEAAMVG 525 Query: 548 RTTLVIAHRLSTIVNAHQILVMDHGRIVERGTHAGLLLAGGLYAQM 593 RTTLVIAHRL+T+ AH+I+VM+HG IVE GTHA L+ AGGLYA + Sbjct: 526 RTTLVIAHRLATVQRAHRIIVMEHGHIVETGTHASLVAAGGLYASL 571 >gi|134096472|ref|YP_001101547.1| putative ABC transporter [Herminiimonas arsenicoxydans] Length = 726 Score = 270 bits (690), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 181/506 (35%), Positives = 278/506 (54%), Gaps = 8/506 (1%) Query: 102 RELMFARVTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMSRDIERGTRGVSSLVSYTLF 161 R + A V++R + + HL LSL + ++TG + I T + +S L Sbjct: 215 RTYILALVSERIGADLRTTTYEHLLRLSLEYFGGKRTGDLMTRIGSETDRICVFLSLHLL 274 Query: 162 SILPTLIEIVLVLAYLATHYDIWFSLITVGALVLYILFTITVTEWRTHFRRSMNELD--- 218 ++ I++ A L + + W +L+T+ L +I + I V R R ++D Sbjct: 275 DFFTDVLMIIMTAAILIS-INPWLALVTLLPLP-FIAWMIHVV--RDKLRNGFEKIDRIW 330 Query: 219 SHANTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIA 278 S D++ VK F E+ EA R+ E + + SL + + + Sbjct: 331 SQVTNVLADTIPGIRVVKAFAQEKREAVRFREANKHNLAINDRVNKVWSLFSPTVTLLTE 390 Query: 279 LAVTLILWRAIAGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFS 338 + + ++ I V G +T+G + A++ + Y L+ + + +++ +R+F Sbjct: 391 IGLLVVWALGIWQVSQGLITVGVLTAFLAYITRFYTRLDSMSRIVSVTQKAATGAKRIFD 450 Query: 339 LLEENREVADRPGAQSLKTHGAELHFEHVDFSYERNRQILFDVDFKVQAGTTTAVVGHSG 398 +L+ V + L ++ +++ F Y NR ++ +D +Q G +VGHSG Sbjct: 451 ILDHVSSVPEATNPVHLTNVQGKITIKNIGFRYG-NRAVIRGLDLDIQPGEMIGLVGHSG 509 Query: 399 SGKSTLSRLLYRFYDVDQGAIRIDGQDLRNVTQASLRQAIGIVPQDTVLFNDTIEYNIAY 458 SGKSTL L+ RFYDV GAI +DG D+R++ R+ IG+V Q+ LF TI NIAY Sbjct: 510 SGKSTLVNLICRFYDVSDGAILVDGIDVRSIPIPEYRRNIGLVLQEPFLFFGTIADNIAY 569 Query: 459 GKPGASREQIVAAAKAAYIHDFIESLPEGYASMVGERGLKLSGGEKQRVAIARTLLKDPA 518 GKP ASRE+I+AAA+AA H+FI LP GY SMVGERG LSGGE+QR++IAR LL DP Sbjct: 570 GKPDASREEIIAAARAANAHEFILRLPHGYDSMVGERGQTLSGGERQRISIARALLIDPH 629 Query: 519 ILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAHQILVMDHGRIVERG 578 ILI DEATS++D+ E+ IQ+ L+ + R RTT+ IAHRLST+ A +I+VMD G+IVE G Sbjct: 630 ILILDEATSSVDTTTEREIQKALDNLVRGRTTIAIAHRLSTLRRADRIVVMDRGQIVEVG 689 Query: 579 THAGLLLAGGLYAQMWLRQQAGAEEE 604 +H LL G Y +++ QQ AE++ Sbjct: 690 SHDELLAREGAYYKLYQAQQRQAEQD 715 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 249 bits (637), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 196/578 (33%), Positives = 291/578 (50%), Gaps = 48/578 (8%) Query: 61 KKLVDAMTITPAHP---QALLVLPLGLLVAYGALRLATALFTELRELMFARVTQRAVRTI 117 ++ V AMTI A +ALL +G +V + A L+T+ R + + T+ Sbjct: 36 RRYVAAMTILTAMTGAFEALLFAMMGRIVDWLARVEPAMLWTQERNSLLLLAAVVMLSTV 95 Query: 118 --ALQVFRHLHALS------LRFHLNR----QTGGMSRDIERGTRGVSSLVSYTLFSILP 165 ALQ F L+ LR++ +R Q+ G +D G V++ V T ++ Sbjct: 96 LVALQTFFKHQTLAGNFPMQLRWNFHRMMLNQSMGFYQDEFAGR--VATKVMQTALAVRD 153 Query: 166 TLIE----IVLVLAYLAT------HYDIWFSLITVGALVLYILFTITVTEWRTHFRRSMN 215 + +V V+ Y T ++ W L + +Y L +H R+ Sbjct: 154 VCMITGDILVFVIIYFVTLVSVVGTFNTWMMLPFLSWAAVYGLALRYFVPRLSHVSRAQA 213 Query: 216 ELDSHANTRAIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQ----SSLSLLNT 271 + S R D+ N TVK F + EA +Q + +AV Q S ++N Sbjct: 214 DARSLMTGRITDAYTNISTVKLFSHAGREAGYARTAMQEF-MSAVHGQMRLVSGFEIVNH 272 Query: 272 GQSAIIALA---VTLILWRAIAGVIDGSMTLGDMVL-VNAFMIQLYIPLNFLGVLYREIK 327 S ++ L+ V L LW + M L +N I ++ + L+ ++ Sbjct: 273 LLSMLLILSTAGVALWLWTQGQVGVGAVAAATAMALRLNG--ISHWVMWE-MATLFEQV- 328 Query: 328 QSLADMERLFSLLEENREVADRPGAQSLKTHGAELHFEHVDFSYERNRQILFDVDFKVQA 387 ++ + L V D A L+ EL F+HV F+Y R ++ + ++ Sbjct: 329 ---GTVQDGINTLARAHTVTDAADAAPLQVMRGELKFDHVGFAYGGTRAVIDQFNLTIRP 385 Query: 388 GTTTAVVGHSGSGKSTLSRLLYRFYDVDQGAIRIDGQDLRNVTQASLRQAIGIVPQDTVL 447 G +VG SG+GKST+ LL RFYD++QG I IDGQD+ +VTQ SLR +G+V QDT L Sbjct: 386 GEKVGLVGRSGAGKSTIVNLLLRFYDLEQGRILIDGQDIAHVTQNSLRAQVGMVTQDTSL 445 Query: 448 FNDTIEYNIAYGKPGASREQIVAAAKAAYIHDFIESLPEG-----YASMVGERGLKLSGG 502 + ++ NI YG+P AS ++ AAK A HDFI +L + Y + VGERG+KLSGG Sbjct: 446 LHRSVRDNILYGRPDASEADMIDAAKRAEAHDFILTLSDAKGRTAYDAHVGERGVKLSGG 505 Query: 503 EKQRVAIARTLLKDPAILIFDEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVN 562 ++QR+AIAR +LKD IL+ DEATSALDS E AIQ L E+ +T + IAHRLSTI Sbjct: 506 QRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYELMEGKTVVAIAHRLSTIAA 565 Query: 563 AHQILVMDHGRIVERGTHAGLLLAGGLYAQMWLRQQAG 600 +++V+D GRIVE+G+H LL GLYA++W Q G Sbjct: 566 MDRLIVLDKGRIVEQGSHRELLQQNGLYARLWAHQSGG 603 >gi|134093728|ref|YP_001098803.1| lipid ABC transporter membrane/ATP-binding protein [Herminiimonas arsenicoxydans] Length = 581 Score = 237 bits (605), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 167/502 (33%), Positives = 267/502 (53%), Gaps = 14/502 (2%) Query: 109 VTQRAVRTIALQVFRHLHALSLRFHLNRQTGGMSRDIERGTRGVSSLVSYTLFSILPTLI 168 V+ R + T+ ++F + + L F+ G + + + + +++ SI+ + Sbjct: 86 VSSRLLSTLRKKMFERILDVPLGFYGTHSVGRVINSMMFEVQQIIEMITKVYTSIIRDSL 145 Query: 169 EIVLVLAYLATHYDIWFSL-ITVGALVLYILFTITVTEWRTHFRRSMNE---LDSHANTR 224 ++++LA+L W + +T+ ALVL L I V RR E +++ Sbjct: 146 TVIVLLAFL-----FWLNWRLTLVALVLLPLIAIVVRFTGKRVRRLTREYQAVNAEMTQV 200 Query: 225 AIDSLLNYETVKYFGNEEFEARRYDEGLQRYERAAVKSQSSLSLLNTGQSAIIALAVTLI 284 +S + +K FG ++E R++ + ++ S+L+ + + AV ++ Sbjct: 201 IEESTRANQVIKIFGGHQYENDRFEVRADKLRSYTMRMASTLAATTPVTQIMASCAVAIV 260 Query: 285 LWRAIAGVIDGSMTLGDMVLVNAFMIQLYIPLNFLGVLYREIKQSLADMERLFSLLEENR 344 + A+ T+G V M+ L PL + + +++ L E +F L++ Sbjct: 261 IVIALIQSEQNQTTVGGFVSFITAMLMLLAPLKNIAEVNGPLQKGLTAAEAVFGLIDAKP 320 Query: 345 EVADRPGAQSLKTHGA-ELHFEHVDFSYERNRQI-LFDVDFKVQAGTTTAVVGHSGSGKS 402 E R ++L+ A +L F ++ FSY ++ + L D++ V G T A VG SG GKS Sbjct: 321 E---RTSGKTLEARAAGKLDFINLGFSYPGHQSMALEDINLSVLPGETIAFVGMSGGGKS 377 Query: 403 TLSRLLYRFYDVDQGAIRIDGQDLRNVTQASLRQAIGIVPQDTVLFNDTIEYNIAYGKPG 462 TL L+ FY G IR+D + + SLR+ I +V Q VLF+DTI NIAYG Sbjct: 378 TLVNLVPGFYPATVGEIRLDDVPIEEIALTSLRRQIAMVSQHVVLFDDTIAANIAYGDET 437 Query: 463 ASREQIVAAAKAAYIHDFIESLPEGYASMVGERGLKLSGGEKQRVAIARTLLKDPAILIF 522 R +I+AAA AA++ D I LP+G +M+G+ G +LSGG++QR+AIAR + KD ILI Sbjct: 438 PDRARILAAATAAHLDDVIAGLPQGLETMIGDNGSRLSGGQRQRLAIARAIYKDAPILIL 497 Query: 523 DEATSALDSRAEQAIQQQLEEIARERTTLVIAHRLSTIVNAHQILVMDHGRIVERGTHAG 582 DEATSALDS +E+A+Q L+ + + RTTLVIAHRLSTI A +I V+ GRIVE G+H Sbjct: 498 DEATSALDSESERAVQAALDALMKGRTTLVIAHRLSTIERADRIAVLAEGRIVELGSHQE 557 Query: 583 LLLAGGLYAQMWLRQQAGAEEE 604 LL +YA ++ Q A E + Sbjct: 558 LLEKNAVYANLYHLQFAKEEPD 579 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,065,605 Number of extensions: 39753 Number of successful extensions: 296 Number of sequences better than 1.0e-08: 45 Number of HSP's gapped: 253 Number of HSP's successfully gapped: 47 Length of query: 634 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 547 Effective length of database: 713,682 Effective search space: 390384054 Effective search space used: 390384054 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)