BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3759.p
         (315 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093508|ref|YP_001098583.1| glutamate/aspartate periplasmic...   277   6e-76

>gi|134093508|ref|YP_001098583.1| glutamate/aspartate periplasmic
           binding protein ABC transporter [Herminiimonas
           arsenicoxydans]
          Length = 300

 Score =  277 bits (708), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 146/297 (49%), Positives = 198/297 (66%), Gaps = 3/297 (1%)

Query: 1   MKLLKLAGVLVGA---SVLMSSVHAEEFTGRLKKIKDSGTLTLGVRDSSIPFSYLDDKQS 57
           MK   L   L+GA   S LM++  A+E +G LKKIK++G +T+G R+SSIPFS+LDDKQ 
Sbjct: 1   MKSTTLLKTLIGAAMMSTLMTAAQAQELSGTLKKIKETGEITIGYRESSIPFSFLDDKQQ 60

Query: 58  YQGYSIDLCLKAATAIQKKLGLTSLNIKMVPVTSATRIPLIANGTTDISCDSATNNQERW 117
             GY++DLC+K    ++  L L +L +K+ PVTS+ RIPL+ NGT D+ C S TN+  R 
Sbjct: 61  PIGYAMDLCMKIVGTVKADLKLPALKVKLQPVTSSNRIPLLNNGTIDLECGSTTNSIARQ 120

Query: 118 NQVAFSVTEFVTANKFLSKKSANLKTLEDLKGKTVVSTSGTSNLKQITALNAERNLGMNI 177
            QVAF  T FV       KKS+N+ T+  L GKTV +TSGT+++  + A     N  +  
Sbjct: 121 EQVAFGPTYFVINVTAAVKKSSNINTIAQLDGKTVSTTSGTTSVPLLKAYKKAGNAQVKE 180

Query: 178 LAAKDHAEAFLMVETGRAAAFVMDDILLSSLAANSKAPGDYQVSAEALSVEPYGLILPKG 237
           +  KDHAEAFL++   RAAAFVMDDILL+   AN+K PGDY++  E+L  EPY ++L KG
Sbjct: 181 IYGKDHAEAFLLMADDRAAAFVMDDILLAGQIANAKRPGDYKILPESLRQEPYSMMLRKG 240

Query: 238 DKDFKKVVDDALTVVYKGDDIKKIYAKWFQSPIPPKGVNLNVPMSPQLQAVLAKPTD 294
           D  FK +VD ++T V +  +I KIYAKWF +PIPPKG+NLN PM+P ++     P D
Sbjct: 241 DPQFKALVDKSITAVMQSGEIDKIYAKWFTTPIPPKGLNLNFPMTPAIKEAFKHPND 297


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.313    0.129    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 513,509
Number of extensions: 18050
Number of successful extensions: 44
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 233
Effective length of database: 730,157
Effective search space: 170126581
Effective search space used: 170126581
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)