BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3758.p
         (249 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...   248   2e-67
gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...    85   4e-18

>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score =  248 bits (633), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 138/241 (57%), Positives = 172/241 (71%), Gaps = 4/241 (1%)

Query: 6   NWGIFWEMSPDGI-PYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWVVRIS 64
           N GIF E  PDG   +   LL+GL WTLA A  AWI A +LG++ G  RTT K W+V + 
Sbjct: 2   NLGIFLEQVPDGDGTWGYMLLSGLGWTLAVAFFAWIFAFVLGSLIGIARTTEKRWLVGLG 61

Query: 65  NGYVELFRNIPLLVQMFLWYFVMPELLPTAMGDWIKGLPNA--SFVTATLALGFFTSSRV 122
             YVELFRNIPLLVQ F+WYFV+P L+P A+  W+  L      FVTA + LGFFTSSR+
Sbjct: 62  GAYVELFRNIPLLVQFFVWYFVIPGLVP-AVKTWVITLDPTIHQFVTAIICLGFFTSSRI 120

Query: 123 AVQVTTGIQALPRGQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVA 182
           A QV +GIQ+LPRGQR AG ALGLT +QTYR+VLLPMA+RIIIP LT+E   +IKN++VA
Sbjct: 121 AEQVRSGIQSLPRGQRNAGYALGLTGMQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVA 180

Query: 183 LTIGLVELTAATYSMREFTFQTFEALTGATVIYVIISVIALFMARLLEKVTAVPGYITGG 242
            +IGLVEL   T  M E TF+ FEA   AT++YV+I+++A  +  L+E+ TAVPG I GG
Sbjct: 181 YSIGLVELFFRTREMGEMTFRYFEAFGAATLMYVVIAMLANRVMALVERRTAVPGLIAGG 240

Query: 243 S 243
            
Sbjct: 241 K 241


>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score = 84.7 bits (208), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 112/220 (50%), Gaps = 10/220 (4%)

Query: 19  PYIDTLLAGLKWTLATAACAWIMALILGTIFGTLRTTTKPWVVRISNGYVELFRNIPLLV 78
           PY   LL+GLK+TL     A I  ++ GT+    R ++   +  ++  YV L R+IPLL+
Sbjct: 14  PY---LLSGLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVNLMRSIPLLL 70

Query: 79  QMFLWYFVMPELLPTAMGDWIK---GLPNASFVTATLALGFFTSSRVAVQVTTGIQALPR 135
            +F +YF++P +L T  G       G   ++++T  +    F ++     +  GIQ++ +
Sbjct: 71  VIFWFYFLVPVVLQTITGSERPVQLGADRSAYITFIM----FEAAYFCEIMRAGIQSISK 126

Query: 136 GQRMAGAALGLTPVQTYRYVLLPMAFRIIIPALTNEFAAIIKNSSVALTIGLVELTAATY 195
           GQ  A  ALGL+  Q  R V+LP AFR ++P L  +   + ++ S+   + + +   A+ 
Sbjct: 127 GQVNAAYALGLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLNVTDFVGASV 186

Query: 196 SMREFTFQTFEALTGATVIYVIISVIALFMARLLEKVTAV 235
            + +   +  E      ++Y ++S     M + L+K  A+
Sbjct: 187 KIAQRDSRVVEMYLFVAIVYFVLSFALSSMVKQLQKRIAI 226


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 476,683
Number of extensions: 18615
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 2
Length of query: 249
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 170
Effective length of database: 740,042
Effective search space: 125807140
Effective search space used: 125807140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 127 (53.5 bits)