BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.3757.p
         (231 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC transpo...   301   1e-83
gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC transpo...   102   2e-23

>gi|134093510|ref|YP_001098585.1| glutamate/aspartate ABC
           transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 228

 Score =  301 bits (772), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 153/228 (67%), Positives = 187/228 (82%), Gaps = 2/228 (0%)

Query: 4   NFDFDVIQRSWVYLFTTGLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATTYVN 63
           + DFDVI R+W YL + GLK+TL LT +A  GG++ GTLLA+ RLSS K L+F+A  YVN
Sbjct: 3   DLDFDVISRTWPYLLS-GLKYTLQLTLTAAIGGVLFGTLLALARLSSFKSLAFLAAAYVN 61

Query: 64  LIRSIPLVLVIFWFYFLVPFIGAWIIGASEPIQVGAFESALITFILFEAAYYCEIMRSGI 123
           L+RSIPL+LVIFWFYFLVP +   I G+  P+Q+GA  SA ITFI+FEAAY+CEIMR+GI
Sbjct: 62  LMRSIPLLLVIFWFYFLVPVVLQTITGSERPVQLGADRSAYITFIMFEAAYFCEIMRAGI 121

Query: 124 QSIPRGQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGSVPD 183
           QSI +GQV A YA+G++Y Q M  VVLPQAFRNM PILLTQTIVLFQDVSLV +L +V D
Sbjct: 122 QSISKGQVNAAYALGLSYAQAMRLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLL-NVTD 180

Query: 184 FVTSASKIAQRDGRLVEMYLFVAVVYFILSFSLSQLVKRFQKKIAIIR 231
           FV ++ KIAQRD R+VEMYLFVA+VYF+LSF+LS +VK+ QK+IAIIR
Sbjct: 181 FVGASVKIAQRDSRVVEMYLFVAIVYFVLSFALSSMVKQLQKRIAIIR 228


>gi|134093509|ref|YP_001098584.1| glutamate/aspartate ABC
           transporter permease [Herminiimonas arsenicoxydans]
          Length = 243

 Score =  102 bits (253), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 121/221 (54%), Gaps = 7/221 (3%)

Query: 13  SWVYLFTTGLKFTLILTFSAMAGGIILGTLLAMMRLSSNKPLSFIATTYVNLIRSIPLVL 72
           +W Y+  +GL +TL + F A     +LG+L+ + R +  + L  +   YV L R+IPL++
Sbjct: 16  TWGYMLLSGLGWTLAVAFFAWIFAFVLGSLIGIARTTEKRWLVGLGGAYVELFRNIPLLV 75

Query: 73  VIFWFYF----LVPFIGAWIIGASEPIQVGAFESALITFILFEAAYYCEIMRSGIQSIPR 128
             F +YF    LVP +  W+I     I    F +A+I    F ++   E +RSGIQS+PR
Sbjct: 76  QFFVWYFVIPGLVPAVKTWVITLDPTIH--QFVTAIICLGFFTSSRIAEQVRSGIQSLPR 133

Query: 129 GQVFAGYAIGMNYWQMMGNVVLPQAFRNMTPILLTQTIVLFQDVSLVYVLGSVPDFVTSA 188
           GQ  AGYA+G+   Q    V+LP A+R + P L ++ + L ++ ++ Y +G V  F  + 
Sbjct: 134 GQRNAGYALGLTGMQTYRFVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGLVELFFRT- 192

Query: 189 SKIAQRDGRLVEMYLFVAVVYFILSFSLSQLVKRFQKKIAI 229
            ++ +   R  E +    ++Y +++   ++++   +++ A+
Sbjct: 193 REMGEMTFRYFEAFGAATLMYVVIAMLANRVMALVERRTAV 233


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.333    0.144    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 400,234
Number of extensions: 15500
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 231
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 152
Effective length of database: 740,042
Effective search space: 112486384
Effective search space used: 112486384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 127 (53.5 bits)