BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.3756.p (242 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport A... 449 e-128 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 143 7e-36 gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding pr... 140 8e-35 gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding pro... 139 1e-34 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 139 1e-34 >gi|134093511|ref|YP_001098586.1| glutamate/aspartate transport ATP-binding protein gltL [Herminiimonas arsenicoxydans] Length = 241 Score = 449 bits (1156), Expect = e-128, Method: Compositional matrix adjust. Identities = 212/240 (88%), Positives = 229/240 (95%) Query: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 MIE+ NVSKWYGSFQVL DC+TSV KGDVVVVCGPSGSGKSTLIKTVNGLEPFQKG+ITV Sbjct: 1 MIEMKNVSKWYGSFQVLNDCTTSVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGSITV 60 Query: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 DG+SVGDPKTNL LR+RIGMVFQNFELFPHLSIRENLT+GQI+VLGRS+EEA E+GLKY Sbjct: 61 DGISVGDPKTNLPALRSRIGMVFQNFELFPHLSIRENLTLGQIRVLGRSEEEAAERGLKY 120 Query: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 LDRVGL+A KDKFPGQLSGGQQQRVAIARAL+MDPIAMLFDEPTSALDPEMINEVLDVMV Sbjct: 121 LDRVGLIAQKDKFPGQLSGGQQQRVAIARALAMDPIAMLFDEPTSALDPEMINEVLDVMV 180 Query: 181 GLAQEGMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFASPRSERARDFLAKII 240 GLAQ+GMTMMVVTHEMGFARKVANRV+FMD+G +VEDC KDEFF + RS+RARDFLAKII Sbjct: 181 GLAQDGMTMMVVTHEMGFARKVANRVIFMDQGTIVEDCTKDEFFGTVRSDRARDFLAKII 240 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 143 bits (361), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 140/243 (57%), Gaps = 10/243 (4%) Query: 2 IELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITVD 61 IE+ N++K +G+F L D S G++ + GPSG GK+TL++ + GLE G + +D Sbjct: 3 IEVKNINKKFGNFVALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 62 GVSVGDPKTNLSKLRAR-IGMVFQNFELFPHLSIRENLTIG-QIKVLGRSKEEAT--EKG 117 G + +R R +G VFQ++ LF H+++ EN+ G +++ E+ EK Sbjct: 63 G-----EDASARHVRERQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKV 117 Query: 118 LKYLDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLD 177 K L+ V L D++P QLSGGQ+QR+A+ARAL+++P +L DEP ALD ++ E+ Sbjct: 118 TKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRR 177 Query: 178 VMVGLAQE-GMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFASPRSERARDFL 236 + L E +T + VTH+ A +VA+++V M+KG V + A + + +P S FL Sbjct: 178 WLRRLHDELHVTSIFVTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFL 237 Query: 237 AKI 239 + Sbjct: 238 GNV 240 >gi|134093752|ref|YP_001098827.1| phosphate import ATP-binding protein [Herminiimonas arsenicoxydans] Length = 281 Score = 140 bits (352), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 88/249 (35%), Positives = 145/249 (58%), Gaps = 17/249 (6%) Query: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQ-----K 55 ++++ +++ +YG Q L D + +V +G V+ GPSG GKSTL++ N + + Sbjct: 34 VLQVKDLNLFYGKTQALFDINLNVPRGQVLAFIGPSGCGKSTLLRCFNRMNDLVDSCRVE 93 Query: 56 GTITVDGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLG---RSK-E 111 G + VDG +V + N+++LR R+GMVFQ FP +I EN+ G +++LG R++ + Sbjct: 94 GEVIVDGRNVYERSVNVAELRRRVGMVFQKPNPFPK-TIYENVAYG-LRLLGVKNRAQLD 151 Query: 112 EATEKGLK---YLDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALD 168 E E+ L+ D V H LSGGQQQR+ IARA++++P +L DEP SALD Sbjct: 152 EVVERSLRQAALWDEVKDRLHSSGL--SLSGGQQQRLVIARAIALEPEVLLLDEPCSALD 209 Query: 169 PEMINEVLDVMVGLAQEGMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFASPR 228 P ++ D++ L Q+ T+++VTH M A +V++ FM G +VE D+ F P Sbjct: 210 PIATAKIEDLLDDLKQK-YTIVIVTHNMQQAARVSDFTGFMFMGKLVEFSVTDQMFTQPT 268 Query: 229 SERARDFLA 237 +++ D++ Sbjct: 269 NKQTMDYIT 277 >gi|134096065|ref|YP_001101140.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 227 Score = 139 bits (350), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 126/218 (57%), Gaps = 4/218 (1%) Query: 1 MIELNNVSKWYG-SFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTIT 59 MIE VSK Y + L+D + SV KG++V + GPSG+GKSTL+K + +E GT+ Sbjct: 1 MIEFRQVSKKYAQNVTALSDITLSVDKGELVFLAGPSGAGKSTLLKMIAAIERPSAGTVI 60 Query: 60 VDGVSVGDPKTN-LSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGL 118 V +G K + L LR +G++FQ L S+ N+ + I V G ++ +A + Sbjct: 61 VSDHDIGRIKNSGLPYLRRNLGLIFQQQRLLSDRSVLANVMLPLI-VCGAARADAERRAR 119 Query: 119 KYLDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDV 178 LD+VGLL P LSGG+QQRV+IARA+ P +L DEPT+ LD E N+VLD Sbjct: 120 AALDKVGLLDKAASAPQTLSGGEQQRVSIARAIVNRPQIILADEPTANLDRESANKVLDA 179 Query: 179 MVGLAQEGMTMMVVTHEMGFARKVANRVVFMDKGVVVE 216 + G+T ++ TH+ F A RV+++D G ++E Sbjct: 180 LKAFHAVGVTCLISTHDEQFL-DTATRVIYLDHGKIIE 216 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 139 bits (350), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 137/237 (57%), Gaps = 6/237 (2%) Query: 1 MIELNNVSKWYGSFQVLTDCSTSVKKGDVVVVCGPSGSGKSTLIKTVNGLEPFQKGTITV 60 ++E+ N+++ +G V+ + S S++ G+ + GPSG GK+TL++ + G + G I + Sbjct: 3 LLEIRNLTRRFGDNTVVDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILL 62 Query: 61 DGVSVGDPKTNLSKLRARIGMVFQNFELFPHLSIRENLTIGQIKVLGRSKEEATEKGLKY 120 DGV + T + + + VFQN+ LFPH+++ N+ +++ K E +K + Sbjct: 63 DGVDL----TGVPPEQRVVRTVFQNYALFPHMTVAGNIAF-PLEMANTPKSEIKQKVDEA 117 Query: 121 LDRVGLLAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEVLDVMV 180 L+ V L ++P +LSGGQ+QRV+IARAL P +L DEP SALD ++ ++ ++ Sbjct: 118 LEDVRLTGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELI 177 Query: 181 GLAQE-GMTMMVVTHEMGFARKVANRVVFMDKGVVVEDCAKDEFFASPRSERARDFL 236 L +E G+T + VTH+ A +++R+ M+KG + + ++ PRS DF+ Sbjct: 178 NLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFI 234 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 427,263 Number of extensions: 16488 Number of successful extensions: 229 Number of sequences better than 1.0e-08: 48 Number of HSP's gapped: 142 Number of HSP's successfully gapped: 51 Length of query: 242 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 163 Effective length of database: 740,042 Effective search space: 120626846 Effective search space used: 120626846 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)